Non-Coding RNA Search

rche23_c11.y1

Sequence:


               
               GCGATTTCCTCCTCAAAGATTTGGCCAGAGGAGGGTCCGACACACAGCCAGGAGTCACCT
GGAATGACAGTCAAGTGTCAGCACTGGAAACAACCGAAAAGATGATTTTACAAACGGGGA
AACAGAGGCTGGAGAGGGGAATTGACTTGGCCAGTGTCAGGAGGACTGTCAGTGGCAGAT
CCAAACCCACTGCCGCACGGTCTCTACCTGGTTTTCTCTTTGATTCTGTCTGGTTTGCTC
TCCATTTCTTTGGGCTTCTGCCCTCCTTCTGAGATGCTGCGGGAGGGGAGGAGCTTTGGA
GCTCTCCCAGGATGGGCAAAGGCCAACCAAGAAAGTGGAGGAGGGTAGCGTGTCAGAGTC
GCGTTGGGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGATTTCCTCCTCAAAGATTTGGCCAGAGGAGGGTCCGACACACAGCCAGGAGTCACCT
GGAATGACAGTCAAGTGTCAGCACTGGAAACAACCGAAAAGATGATTTTACAAACGGGGA
AACAGAGGCTGGAGAGGGGAATTGACTTGGCCAGTGTCAGGAGGACTGTCAGTGGCAGAT
CCAAACCCACTGCCGCACGGTCTCTACCTGGTTTTCTCTTTGATTCTGTCTGGTTTGCTC
TCCATTTCTTTGGGCTTCTGCCCTCCTTCTGAGATGCTGCGGGAGGGGAGGAGCTTTGGA
GCTCTCCCAGGATGGGCAAAGGCCAACCAAGAAAGTGGAGGAGGGTAGCGTGTCAGAGTC
GCGTTGGGGGC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               14-201, gnl|bosTau2|chr19 (36740703-36740891)
               

               
               14-201, gnl|Hg17|chr17 (37692530-37692342)
               

               
               14-201, gnl|Mm7|chr11 (100967927-100967750)
               


               
               211-371, gnl|bosTau2|chr19 (36741466-36741628)
               

               
               211-371, gnl|canFam2|chr9 (23958009-23957809)
               

               
               211-371, gnl|hg17|chr17 (37691166-37691368)
               

               
               211-371, gnl|Hg17|chr17 (37691664-37691272)
               

               
               211-371, gnl|loxAfr1|scaffold_72222 (8060-7860)
               

               
               211-371, gnl|mm7|chr11 (100966832-100967076)
               

               
               211-371, gnl|oryCun1|scaffold_195124 (1227-1029)
               

               
               211-371, gnl|panTro1|chr19 (40893783-40893985)
               

               
               211-371, gnl|rheMac2|chr16 (52396174-52396371)
               

               
               211-371, gnl|rn3|chr10 (89807082-89807313)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-201, gnl|bosTau2|chr19 (36740703-36740891)
               

               
               14-201, gnl|Hg17|chr17 (37692530-37692342)
               

               
               14-201, gnl|Mm7|chr11 (100967927-100967750)
               


               
               211-371, gnl|bosTau2|chr19 (36741466-36741628)
               

               
               211-371, gnl|canFam2|chr9 (23958009-23957809)
               

               
               211-371, gnl|hg17|chr17 (37691166-37691368)
               

               
               211-371, gnl|Hg17|chr17 (37691664-37691272)
               

               
               211-371, gnl|loxAfr1|scaffold_72222 (8060-7860)
               

               
               211-371, gnl|mm7|chr11 (100966832-100967076)
               

               
               211-371, gnl|oryCun1|scaffold_195124 (1227-1029)
               

               
               211-371, gnl|panTro1|chr19 (40893783-40893985)
               

               
               211-371, gnl|rheMac2|chr16 (52396174-52396371)
               

               
               211-371, gnl|rn3|chr10 (89807082-89807313)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	14-201, gnl\|bosTau2\|chr19 (36740703-36740891)
	14-201, gnl\|Hg17\|chr17 (37692530-37692342)
	14-201, gnl\|Mm7\|chr11 (100967927-100967750)

	211-371, gnl\|bosTau2\|chr19 (36741466-36741628)
	211-371, gnl\|canFam2\|chr9 (23958009-23957809)
	211-371, gnl\|hg17\|chr17 (37691166-37691368)
	211-371, gnl\|Hg17\|chr17 (37691664-37691272)
	211-371, gnl\|loxAfr1\|scaffold_72222 (8060-7860)
	211-371, gnl\|mm7\|chr11 (100966832-100967076)
	211-371, gnl\|oryCun1\|scaffold_195124 (1227-1029)
	211-371, gnl\|panTro1\|chr19 (40893783-40893985)
	211-371, gnl\|rheMac2\|chr16 (52396174-52396371)
	211-371, gnl\|rn3\|chr10 (89807082-89807313)