Non-Coding RNA Search

rche29_g12.y1

Sequence:


               
               GAGGCCCACACCACAGTGGGTCCCCACCACACACCACAGGGCCCTTTCCTGACGTGCCCT
CCAACTCTGGCCAGTGAACTGCCATGAGACCCGATGCCCAGTACACTCTGAGACCCAGGG
GCTAATCCCGGGCCTTCTGCTGCCCCTTAGAGCCACGTGCGGTACAACATCCCCGTGTCC
TCTTCCTCCCTTCCGGCCATTAAGCGCCTGGGTCTCAGGGGCATCTCCTGCATCAGCCTG
ACCAACCTGGATGGCTCGCCGGCTTCACACGAGGTGCTGCAGTCTGTTGCCGACCACCTA
GGGCCGCACTTACAGAGCCTGTGCCTTGGTGGAGGCAGTCCCACAGAGGCCTCCTTCGTG
GCTCTGATCCTGGGCTGCCCGGCCCTGCGTATCCTTGACCTCAGTGGCTGCAACAGCCTC
TTCACGTCAGGCATGCTGCTGGCTCAGCCCGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCCACACCACAGTGGGTCCCCACCACACACCACAGGGCCCTTTCCTGACGTGCCCT
CCAACTCTGGCCAGTGAACTGCCATGAGACCCGATGCCCAGTACACTCTGAGACCCAGGG
GCTAATCCCGGGCCTTCTGCTGCCCCTTAGAGCCACGTGCGGTACAACATCCCCGTGTCC
TCTTCCTCCCTTCCGGCCATTAAGCGCCTGGGTCTCAGGGGCATCTCCTGCATCAGCCTG
ACCAACCTGGATGGCTCGCCGGCTTCACACGAGGTGCTGCAGTCTGTTGCCGACCACCTA
GGGCCGCACTTACAGAGCCTGTGCCTTGGTGGAGGCAGTCCCACAGAGGCCTCCTTCGTG
GCTCTGATCCTGGGCTGCCCGGCCCTGCGTATCCTTGACCTCAGTGGCTGCAACAGCCTC
TTCACGTCAGGCATGCTGCTGGCTCAGCCCGAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               278-442, - strand, RNAz p=0.993136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-442, - strand, RNAz p=0.993136

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-442, gnl|bosTau2|chr18 (28392587-28392157)
               

               
               8-442, gnl|Hg17|chr16 (65802574-65802137)
               

               
               8-442, gnl|Mm7|chr8 (103914859-103914416)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-442, gnl|bosTau2|chr18 (28392587-28392157)
               

               
               8-442, gnl|Hg17|chr16 (65802574-65802137)
               

               
               8-442, gnl|Mm7|chr8 (103914859-103914416)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	8-442, gnl\|bosTau2\|chr18 (28392587-28392157)
	8-442, gnl\|Hg17\|chr16 (65802574-65802137)
	8-442, gnl\|Mm7\|chr8 (103914859-103914416)