Non-Coding RNA Search

rche29_l6.y1

Sequence:


               
               CCAGCTTTGTCAGCAGGTAGGAGGCCTAGAGAGGCTACACCTCAAATCCCACCCTAATGC
TGGATTAGACGGCTCCTGCTTTGGGCTAGCCTCTGTTGATGAGATAAATCAAGTCTGACT
TCAGATCAGAGGGTCTCAAACTGCTTGCTAGGAGAAGAGTGGTGGTCAGAAGAATCGCCT
CTTTCTATCTTGAACTGAAGCCCTGGACTTCACAGGCCTCTGATGAGGATTCTGCTTGCA
ACCCAAAGAGGTTCTGCCCTTGGAGATGACCCTTGGCTGTTTTGGTGCATGCACCTGACC
TTCCCCTTTCCCCTGACATCCATCCCCATTCCTGCCCTGTGCCCTGTTGGCGTGTGTCTG
AGTTTATTTCACTCTGTTTAAATCGTTCGTTTGCCTGTCTTTCACAGATTTCTCCATGTC
TCCTCAACAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACCAGTTAGAGA
GGGTACTACTCTTTAAGAACCTCAAGGTCTCTCTCCCTCTCCCTCTCCTTACCCCTTTAT
TTACTTATTTAAATGTTTATTATTTATTTTTATGTAACATCTGGGTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGCTTTGTCAGCAGGTAGGAGGCCTAGAGAGGCTACACCTCAAATCCCACCCTAATGC
TGGATTAGACGGCTCCTGCTTTGGGCTAGCCTCTGTTGATGAGATAAATCAAGTCTGACT
TCAGATCAGAGGGTCTCAAACTGCTTGCTAGGAGAAGAGTGGTGGTCAGAAGAATCGCCT
CTTTCTATCTTGAACTGAAGCCCTGGACTTCACAGGCCTCTGATGAGGATTCTGCTTGCA
ACCCAAAGAGGTTCTGCCCTTGGAGATGACCCTTGGCTGTTTTGGTGCATGCACCTGACC
TTCCCCTTTCCCCTGACATCCATCCCCATTCCTGCCCTGTGCCCTGTTGGCGTGTGTCTG
AGTTTATTTCACTCTGTTTAAATCGTTCGTTTGCCTGTCTTTCACAGATTTCTCCATGTC
TCCTCAACAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACCAGTTAGAGA
GGGTACTACTCTTTAAGAACCTCAAGGTCTCTCTCCCTCTCCCTCTCCTTACCCCTTTAT
TTACTTATTTAAATGTTTATTATTTATTTTTATGTAACATCTGGGTCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               436-590, - strand, RNAz p=0.991758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-590, - strand, RNAz p=0.991758

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               438-577, - strand, RNAmicro p=0.93603

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               438-577, - strand, RNAmicro p=0.93603

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-590, gnl|bosTau2|chr26 (14159664-14159081)
               

               
               1-590, gnl|Hg17|chr10 (104103721-104104291)
               

               
               1-590, gnl|Mm7|chr19 (46152663-46153218)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-590, gnl|bosTau2|chr26 (14159664-14159081)
               

               
               1-590, gnl|Hg17|chr10 (104103721-104104291)
               

               
               1-590, gnl|Mm7|chr19 (46152663-46153218)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-590, gnl\|bosTau2\|chr26 (14159664-14159081)
	1-590, gnl\|Hg17\|chr10 (104103721-104104291)
	1-590, gnl\|Mm7\|chr19 (46152663-46153218)