Non-Coding RNA Search

rche31_b18.y1

Sequence:


               
               GCTGCTGTCGGCTAAACCTCCACCTGCGCTAGGTAGGCGTCCTACTCGCCGACTTTCTGT
TCCTTTGGAGGGTGTTGGGTGTCGGTCCTTTTTCAAAAGTGTTTTGGAGCTTTTCTCTGC
CCCCTCTTTTCCCACCACACCACCCCATGGCCACTTCTCTCTGGATTTCAGCTGTACTGT
CTTTACTCTTTATTTAGGGGTGGGGCATTCATTGTTTAGGGTTTTTGCTGTTGCAATTGG
GAACTCCTCCATTTGAGCAACTTGGGAACAATTTGATAACACACCACAGGAAGTAGCTCT
CCCCCCTCCCCGGCAGCTCCCTCCTCCCCCAAGGGATGGTTGGGGGCCTGTCCAGAGGGT
CTTCAGAAGCCCCCCTGGGAGGGAGGGGAGCATGAGCACACCCAGCCCTCTTCCAGGGTG
TGACTTGGCCCCTCTGGCTTGTCTTTCTGTGCCTTACTCCCTCCTCCCTGCATCTCCCTC
CTTGGCCCCCATCTGGAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCTGTCGGCTAAACCTCCACCTGCGCTAGGTAGGCGTCCTACTCGCCGACTTTCTGT
TCCTTTGGAGGGTGTTGGGTGTCGGTCCTTTTTCAAAAGTGTTTTGGAGCTTTTCTCTGC
CCCCTCTTTTCCCACCACACCACCCCATGGCCACTTCTCTCTGGATTTCAGCTGTACTGT
CTTTACTCTTTATTTAGGGGTGGGGCATTCATTGTTTAGGGTTTTTGCTGTTGCAATTGG
GAACTCCTCCATTTGAGCAACTTGGGAACAATTTGATAACACACCACAGGAAGTAGCTCT
CCCCCCTCCCCGGCAGCTCCCTCCTCCCCCAAGGGATGGTTGGGGGCCTGTCCAGAGGGT
CTTCAGAAGCCCCCCTGGGAGGGAGGGGAGCATGAGCACACCCAGCCCTCTTCCAGGGTG
TGACTTGGCCCCTCTGGCTTGTCTTTCTGTGCCTTACTCCCTCCTCCCTGCATCTCCCTC
CTTGGCCCCCATCTGGAGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               309-501, - strand, RNAz p=0.974715

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-501, - strand, RNAz p=0.974715

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               356-471, - strand, RNAmicro p=0.996762

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               356-471, - strand, RNAmicro p=0.996762

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-501, gnl|bosTau2|chr7 (9297012-9297520)
               

               
               1-501, gnl|Hg17|chr19 (13067513-13068010)
               

               
               1-501, gnl|Mm7|chr8 (83292492-83292022)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-501, gnl|bosTau2|chr7 (9297012-9297520)
               

               
               1-501, gnl|Hg17|chr19 (13067513-13068010)
               

               
               1-501, gnl|Mm7|chr8 (83292492-83292022)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-501, gnl\|bosTau2\|chr7 (9297012-9297520)
	1-501, gnl\|Hg17\|chr19 (13067513-13068010)
	1-501, gnl\|Mm7\|chr8 (83292492-83292022)