Non-Coding RNA Search

rche32_n13.y1

Sequence:


               
               CGGAATAATAACAAAACCTGTAGAAGGTGCCAAAAAGGAAGGAGCTGCTGGATTCTTTAA
AGGAATTGGTAAAGGGCTTGTGGGTGCTGTGGCTCGTCCAACTGGTGGAATCATTGATAT
GGCCAGCAGCACCTTCCAGGGAATTCAGAGGGCTGCAGAGTCAACCGAGGAAGTGTCCAG
GCTCCGTTCCCCTCGTCTGATTCATGAAGATGGTATCATCCGCCCTTATGATAGACAGGA
ATCTGAGGGCTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAATAATAACAAAACCTGTAGAAGGTGCCAAAAAGGAAGGAGCTGCTGGATTCTTTAA
AGGAATTGGTAAAGGGCTTGTGGGTGCTGTGGCTCGTCCAACTGGTGGAATCATTGATAT
GGCCAGCAGCACCTTCCAGGGAATTCAGAGGGCTGCAGAGTCAACCGAGGAAGTGTCCAG
GCTCCGTTCCCCTCGTCTGATTCATGAAGATGGTATCATCCGCCCTTATGATAGACAGGA
ATCTGAGGGCTATGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               23-151, - strand, RNAz p=0.991349
               

               
               35-151, - strand, RNAz p=0.89517

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               23-151, - strand, RNAz p=0.991349
               

               
               35-151, - strand, RNAz p=0.89517

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               23-151, gnl|bosTau2|chr10 (32453952-32453824)
               

               
               23-151, gnl|canFam2|chr30 (29608814-29608926)
               

               
               23-151, gnl|danRer3|chrUn (16870509-16870615)
               

               
               23-151, gnl|dasNov1|scaffold_193100 (4285-4173)
               

               
               23-151, gnl|fr1|chrUn (201590693-201590799)
               

               
               23-151, gnl|galGal2|chr10 (5306112-5306006)
               

               
               23-151, gnl|hg17|chr15 (59948983-59949095)
               

               
               23-151, gnl|Hg17|chr15 (59949118-59948990)
               

               
               23-151, gnl|loxAfr1|scaffold_6347 (33749-33637)
               

               
               23-151, gnl|mm7|chr9 (68006762-68006655)
               

               
               23-151, gnl|Mm7|chr9 (68006630-68006758)
               

               
               23-151, gnl|monDom2|scaffold_12 (52323039-52322932)
               

               
               23-151, gnl|oryCun1|scaffold_174591 (41767-41655)
               

               
               23-151, gnl|panTro1|chr16 (60395617-60395729)
               

               
               23-151, gnl|rheMac2|chr7 (40280568-40280680)
               

               
               23-151, gnl|rn3|chr8 (72371525-72371418)
               

               
               23-151, gnl|tetNig1|chrUn_random (6228454-6228560)
               

               
               23-151, gnl|xenTro1|scaffold_62 (771060-771172)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-151, gnl|bosTau2|chr10 (32453952-32453824)
               

               
               23-151, gnl|canFam2|chr30 (29608814-29608926)
               

               
               23-151, gnl|danRer3|chrUn (16870509-16870615)
               

               
               23-151, gnl|dasNov1|scaffold_193100 (4285-4173)
               

               
               23-151, gnl|fr1|chrUn (201590693-201590799)
               

               
               23-151, gnl|galGal2|chr10 (5306112-5306006)
               

               
               23-151, gnl|hg17|chr15 (59948983-59949095)
               

               
               23-151, gnl|Hg17|chr15 (59949118-59948990)
               

               
               23-151, gnl|loxAfr1|scaffold_6347 (33749-33637)
               

               
               23-151, gnl|mm7|chr9 (68006762-68006655)
               

               
               23-151, gnl|Mm7|chr9 (68006630-68006758)
               

               
               23-151, gnl|monDom2|scaffold_12 (52323039-52322932)
               

               
               23-151, gnl|oryCun1|scaffold_174591 (41767-41655)
               

               
               23-151, gnl|panTro1|chr16 (60395617-60395729)
               

               
               23-151, gnl|rheMac2|chr7 (40280568-40280680)
               

               
               23-151, gnl|rn3|chr8 (72371525-72371418)
               

               
               23-151, gnl|tetNig1|chrUn_random (6228454-6228560)
               

               
               23-151, gnl|xenTro1|scaffold_62 (771060-771172)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	23-151, - strand, RNAz p=0.991349
	35-151, - strand, RNAz p=0.89517

	23-151, gnl\|bosTau2\|chr10 (32453952-32453824)
	23-151, gnl\|canFam2\|chr30 (29608814-29608926)
	23-151, gnl\|danRer3\|chrUn (16870509-16870615)
	23-151, gnl\|dasNov1\|scaffold_193100 (4285-4173)
	23-151, gnl\|fr1\|chrUn (201590693-201590799)
	23-151, gnl\|galGal2\|chr10 (5306112-5306006)
	23-151, gnl\|hg17\|chr15 (59948983-59949095)
	23-151, gnl\|Hg17\|chr15 (59949118-59948990)
	23-151, gnl\|loxAfr1\|scaffold_6347 (33749-33637)
	23-151, gnl\|mm7\|chr9 (68006762-68006655)
	23-151, gnl\|Mm7\|chr9 (68006630-68006758)
	23-151, gnl\|monDom2\|scaffold_12 (52323039-52322932)
	23-151, gnl\|oryCun1\|scaffold_174591 (41767-41655)
	23-151, gnl\|panTro1\|chr16 (60395617-60395729)
	23-151, gnl\|rheMac2\|chr7 (40280568-40280680)
	23-151, gnl\|rn3\|chr8 (72371525-72371418)
	23-151, gnl\|tetNig1\|chrUn_random (6228454-6228560)
	23-151, gnl\|xenTro1\|scaffold_62 (771060-771172)