Non-Coding RNA Search

rche32_o10.y1

Sequence:


               
               GAGCCATGACAGGAACTCCCAAAGATATCTTTAAAGGAACAAAATCTCCCGAGGTTTTCC
ATGGCTCTTCATTTAAACATTCACTTTTTATCTTGGAGCTTGGTTTGTATTTCAGGGACA
TTGTTTTTAAACTAAGTATAAGACAAGGAGTTTGATGACTGCAAGGTGGGCTTTCCATCT
CAGGAACATATAGCAGAAAGCAGGGGCCCCCTCGCCACTCTGGCAGCCAGAAGGCCACCT
CCCAGTGCCCACATCCAATCCTTGACATTTATTCCAGACGCATATGGCCCAGGCCCCCAG
GGTTCACTGAGCTGAGGACACCTGCATGGGTATAGAGCCAAGATGCGTGTCACCAGCTGT
CTCTCTATTTCATGGGCTTCCCTATCCATCTTCTGCGATGCCCAGTAAAATGCCCATCTT
ATTTTCCATCACATTTTTATTTCTGTTCTCTGACCTTCCTTGCAGCTTCCTTCTACATCA
GTATGTCATTGTTGGGCCATTTGGTCAAGTGCATGCCTATTTGGAAAGACTCTTTTCACC
TCGTCTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCATGACAGGAACTCCCAAAGATATCTTTAAAGGAACAAAATCTCCCGAGGTTTTCC
ATGGCTCTTCATTTAAACATTCACTTTTTATCTTGGAGCTTGGTTTGTATTTCAGGGACA
TTGTTTTTAAACTAAGTATAAGACAAGGAGTTTGATGACTGCAAGGTGGGCTTTCCATCT
CAGGAACATATAGCAGAAAGCAGGGGCCCCCTCGCCACTCTGGCAGCCAGAAGGCCACCT
CCCAGTGCCCACATCCAATCCTTGACATTTATTCCAGACGCATATGGCCCAGGCCCCCAG
GGTTCACTGAGCTGAGGACACCTGCATGGGTATAGAGCCAAGATGCGTGTCACCAGCTGT
CTCTCTATTTCATGGGCTTCCCTATCCATCTTCTGCGATGCCCAGTAAAATGCCCATCTT
ATTTTCCATCACATTTTTATTTCTGTTCTCTGACCTTCCTTGCAGCTTCCTTCTACATCA
GTATGTCATTGTTGGGCCATTTGGTCAAGTGCATGCCTATTTGGAAAGACTCTTTTCACC
TCGTCTGGGG

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               4-550, gnl|bosTau2|chr26 (22022199-22021664)
               

               
               4-550, gnl|canFam2|chr28 (28280965-28281440)
               

               
               4-550, gnl|dasNov1|scaffold_36525 (44820-45280)
               

               
               4-550, gnl|echTel1|scaffold_259621 (7181-7641)
               

               
               4-550, gnl|hg17|chr10 (116208593-116209075)
               

               
               4-550, gnl|Hg17|chr10 (116209134-116208598)
               

               
               4-550, gnl|loxAfr1|scaffold_360 (24513-24055)
               

               
               4-550, gnl|monDom2|scaffold_14 (47469868-47469483)
               

               
               4-550, gnl|panTro1|chr8 (118373219-118373696)
               

               
               4-550, gnl|rn3|chr1 (263610583-263611041)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-550, gnl|bosTau2|chr26 (22022199-22021664)
               

               
               4-550, gnl|canFam2|chr28 (28280965-28281440)
               

               
               4-550, gnl|dasNov1|scaffold_36525 (44820-45280)
               

               
               4-550, gnl|echTel1|scaffold_259621 (7181-7641)
               

               
               4-550, gnl|hg17|chr10 (116208593-116209075)
               

               
               4-550, gnl|Hg17|chr10 (116209134-116208598)
               

               
               4-550, gnl|loxAfr1|scaffold_360 (24513-24055)
               

               
               4-550, gnl|monDom2|scaffold_14 (47469868-47469483)
               

               
               4-550, gnl|panTro1|chr8 (118373219-118373696)
               

               
               4-550, gnl|rn3|chr1 (263610583-263611041)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	4-550, gnl\|bosTau2\|chr26 (22022199-22021664)
	4-550, gnl\|canFam2\|chr28 (28280965-28281440)
	4-550, gnl\|dasNov1\|scaffold_36525 (44820-45280)
	4-550, gnl\|echTel1\|scaffold_259621 (7181-7641)
	4-550, gnl\|hg17\|chr10 (116208593-116209075)
	4-550, gnl\|Hg17\|chr10 (116209134-116208598)
	4-550, gnl\|loxAfr1\|scaffold_360 (24513-24055)
	4-550, gnl\|monDom2\|scaffold_14 (47469868-47469483)
	4-550, gnl\|panTro1\|chr8 (118373219-118373696)
	4-550, gnl\|rn3\|chr1 (263610583-263611041)