Non-Coding RNA Search

rche33_e21.y1

Sequence:


               
               GTTTTCAGTATATAGAACAGGAAGCAGCTGTTGCTCTTGCTGCTGTGTCCTGAGTTCCTG
GGAGGATGTAAAGTGATTCTGCTTTTTTACCTTCTACCAGATCATACCAGCATCAGTGAT
TAAAAAGTATAAGGAATCCAATCTTTGTTATGCTTGCATTGTCAAGCTTTCTGAGAGCAG
AGACTCTATGTGTTTCGGCTGCCCTGGTAGCCCCATGTCTGGCAGTCAGTGCTCAGGAAA
TTCCTGTTTAAGTATGAATATTGGTGTTAAAGTGTTTATTCATAGGTTACTAGGCATGTC
TTATCAGTTACAAGAAAGCAAAAGTCTTTGCAAAATGTCGTGAGAATTTTCTTCTACTTG
TGGTACATACATCGAAGCTTATATTCCAGTGCCTGGAAAATATAGGTGAGAATAGGAGCA
TAACAAGACTTTTCATTGGGTCTATGCAGTTACCAGCAGATAGAAATGAACACAAAGACC
CTCGATGAGCTGTGAGGTAGTGTATATGCGCATATTTACCTAACTCTTTCCTGTATCTTC
TTTTCCAAGAGGAAACTGCAATTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCAGTATATAGAACAGGAAGCAGCTGTTGCTCTTGCTGCTGTGTCCTGAGTTCCTG
GGAGGATGTAAAGTGATTCTGCTTTTTTACCTTCTACCAGATCATACCAGCATCAGTGAT
TAAAAAGTATAAGGAATCCAATCTTTGTTATGCTTGCATTGTCAAGCTTTCTGAGAGCAG
AGACTCTATGTGTTTCGGCTGCCCTGGTAGCCCCATGTCTGGCAGTCAGTGCTCAGGAAA
TTCCTGTTTAAGTATGAATATTGGTGTTAAAGTGTTTATTCATAGGTTACTAGGCATGTC
TTATCAGTTACAAGAAAGCAAAAGTCTTTGCAAAATGTCGTGAGAATTTTCTTCTACTTG
TGGTACATACATCGAAGCTTATATTCCAGTGCCTGGAAAATATAGGTGAGAATAGGAGCA
TAACAAGACTTTTCATTGGGTCTATGCAGTTACCAGCAGATAGAAATGAACACAAAGACC
CTCGATGAGCTGTGAGGTAGTGTATATGCGCATATTTACCTAACTCTTTCCTGTATCTTC
TTTTCCAAGAGGAAACTGCAATTCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               298-415, + strand, RNAz p=0.630708

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               298-415, + strand, RNAz p=0.630708

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-555, gnl|bosTau2|chr3 (37898007-37898551)
               

               
               1-555, gnl|Hg17|chr1 (101173473-101172954)
               

               
               1-555, gnl|Mm7|chr3 (115699437-115699898)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-555, gnl|bosTau2|chr3 (37898007-37898551)
               

               
               1-555, gnl|Hg17|chr1 (101173473-101172954)
               

               
               1-555, gnl|Mm7|chr3 (115699437-115699898)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-555, gnl\|bosTau2\|chr3 (37898007-37898551)
	1-555, gnl\|Hg17\|chr1 (101173473-101172954)
	1-555, gnl\|Mm7\|chr3 (115699437-115699898)