Non-Coding RNA Search

rche35_i24.y1

Sequence:


               
               ATTTTCTTTTTCCCTCTCTAGAGAGCCCACTGGTTCACCTCATAGATGCCAGAAAGTGGG
ACATTTCCATTAGCATGGCCATCTTTGAAAGTTAGTATCTCTAGGAAAATCACTATGTAG
TCTAGTCAGATAGACCATATTTAGAGCTTGATTCATAAAATGCTACTAGGTTTACTTGGT
TTTCAGTACTAGGGAGGTCTAGGGTAATATTGCCTGGTCTCTTCTGCTGATCTTTGAGGT
GAAAATGCTTTTTTAAATATTCTTAGTAGTAGTTTTTTAATTTCCAGTCCAAACTGTGTT
TTACCCAGATCTTTATGATGGAATGTTAATAATTCTAATTCTGAGATTGCAAACCTTAAC
AAAATATGAACAAAAATCCCAGAAATGCTCTGTATCCAAAAATAATGTGTTAATAAGGCA
AATTATAACAATACGTATTGGTTTGATTAAATGCATGCTTTCTTCCTAAAGTGTGAAAAA
TTTTAGGGGTTTTTTTATAGTTTTTTTTTTTTAATTAGAAACTAATAAAAATGTTGTTCT
GTGATTTCACTAGCACAGCTGGAGATAGTGTTGGTGTCCAGTAGTCAGGAACATACTGTC
CTCCTAGTGAGACAGTAGAATGCATTAGTGAGAGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCTTTTTCCCTCTCTAGAGAGCCCACTGGTTCACCTCATAGATGCCAGAAAGTGGG
ACATTTCCATTAGCATGGCCATCTTTGAAAGTTAGTATCTCTAGGAAAATCACTATGTAG
TCTAGTCAGATAGACCATATTTAGAGCTTGATTCATAAAATGCTACTAGGTTTACTTGGT
TTTCAGTACTAGGGAGGTCTAGGGTAATATTGCCTGGTCTCTTCTGCTGATCTTTGAGGT
GAAAATGCTTTTTTAAATATTCTTAGTAGTAGTTTTTTAATTTCCAGTCCAAACTGTGTT
TTACCCAGATCTTTATGATGGAATGTTAATAATTCTAATTCTGAGATTGCAAACCTTAAC
AAAATATGAACAAAAATCCCAGAAATGCTCTGTATCCAAAAATAATGTGTTAATAAGGCA
AATTATAACAATACGTATTGGTTTGATTAAATGCATGCTTTCTTCCTAAAGTGTGAAAAA
TTTTAGGGGTTTTTTTATAGTTTTTTTTTTTTAATTAGAAACTAATAAAAATGTTGTTCT
GTGATTTCACTAGCACAGCTGGAGATAGTGTTGGTGTCCAGTAGTCAGGAACATACTGTC
CTCCTAGTGAGACAGTAGAATGCATTAGTGAGAGCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               7-117, + strand, RNAz p=0.636348

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               7-117, + strand, RNAz p=0.636348

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               7-223, gnl|bosTau2|chr1 (70843422-70843640)
               

               
               7-223, gnl|Hg17|chr3 (157897138-157897391)
               


               
               257-633, gnl|bosTau2|chr1 (70843641-70844016)
               

               
               257-633, gnl|Hg17|chr3 (157897392-157897764)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-223, gnl|bosTau2|chr1 (70843422-70843640)
               

               
               7-223, gnl|Hg17|chr3 (157897138-157897391)
               


               
               257-633, gnl|bosTau2|chr1 (70843641-70844016)
               

               
               257-633, gnl|Hg17|chr3 (157897392-157897764)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	7-223, gnl\|bosTau2\|chr1 (70843422-70843640)
	7-223, gnl\|Hg17\|chr3 (157897138-157897391)

	257-633, gnl\|bosTau2\|chr1 (70843641-70844016)
	257-633, gnl\|Hg17\|chr3 (157897392-157897764)