Non-Coding RNA Search

rche_0293.y1

Sequence:


               
               GTATAGCAGAAATTAATAGAATATGTAAATCAACTATGCTTTAAAACTTTAAAAAAAATT
TTTTTAAAAAGAATGTCAGCACCTTGAGATTAGGGACCCCATCTTGACCATTGCTATATC
CCTAAACAGTACCTGGCATAGAGGAAGCACTTGGTGTATTGTGGTTCAGTAAGTGAATTA
AGTGCTCTTGGACTCATGCTGTCCACACTAGGAAACTAATGCCCTGTAGACTCGTTTATG
CTGTCCACATCAGGAATCTAAGGAGACCAGCCTTTTGCCAAATTTGAATCTATCCCAAAG
AGTATCAGAACTATTTTCTAAGTCAGAGCCCATTATTGATTTGTAGAAAAATCAATAGCT
CCTTATTTAGGAAGTATTGCATATGTGGACAGACATGTACACCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTATAGCAGAAATTAATAGAATATGTAAATCAACTATGCTTTAAAACTTTAAAAAAAATT
TTTTTAAAAAGAATGTCAGCACCTTGAGATTAGGGACCCCATCTTGACCATTGCTATATC
CCTAAACAGTACCTGGCATAGAGGAAGCACTTGGTGTATTGTGGTTCAGTAAGTGAATTA
AGTGCTCTTGGACTCATGCTGTCCACACTAGGAAACTAATGCCCTGTAGACTCGTTTATG
CTGTCCACATCAGGAATCTAAGGAGACCAGCCTTTTGCCAAATTTGAATCTATCCCAAAG
AGTATCAGAACTATTTTCTAAGTCAGAGCCCATTATTGATTTGTAGAAAAATCAATAGCT
CCTTATTTAGGAAGTATTGCATATGTGGACAGACATGTACACCTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               127-241, + strand, RNAz p=0.78091

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               127-241, + strand, RNAz p=0.78091

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               70-407, gnl|bosTau2|chr3 (3956655-3956323)
               

               
               70-407, gnl|dasNov1|scaffold_108562 (525-18)
               

               
               70-407, gnl|hg17|chr1 (162342098-162342590)
               

               
               70-407, gnl|Hg17|chr1 (162342150-162342467)
               

               
               70-407, gnl|panTro1|chr1 (144589008-144589500)
               

               
               70-407, gnl|rheMac2|chr1 (195483285-195483777)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-407, gnl|bosTau2|chr3 (3956655-3956323)
               

               
               70-407, gnl|dasNov1|scaffold_108562 (525-18)
               

               
               70-407, gnl|hg17|chr1 (162342098-162342590)
               

               
               70-407, gnl|Hg17|chr1 (162342150-162342467)
               

               
               70-407, gnl|panTro1|chr1 (144589008-144589500)
               

               
               70-407, gnl|rheMac2|chr1 (195483285-195483777)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	70-407, gnl\|bosTau2\|chr3 (3956655-3956323)
	70-407, gnl\|dasNov1\|scaffold_108562 (525-18)
	70-407, gnl\|hg17\|chr1 (162342098-162342590)
	70-407, gnl\|Hg17\|chr1 (162342150-162342467)
	70-407, gnl\|panTro1\|chr1 (144589008-144589500)
	70-407, gnl\|rheMac2\|chr1 (195483285-195483777)