Non-Coding RNA Search

rche_0332.y1

Sequence:


               
               ATTAAAAAAAGCTTATTTCTTTCTTCAGATATTCCTCTTTCAACTTCCCCTTCTTTCAGC
TGGTTTAAATTAATAGACATTGCTTCTAGTAAGATATATTGAAATAAATAAAAACTTTGG
CTAGAAAAATTAATGGGAGAGCAGTAGTTAGACCTTATGCCTTACTCAGATCACAGAATG
TACTCCAGATGTCTGAGTTTATCTTCCTCTCCACTTTGCCATCTCCCTCAATTTGGTTTG
AAGTCAACTGATGTTTATCTTTCCATACTGGTCAATATTAATAATGGATGAATATGTCTC
CTGCATCACTAAAATGGGAAATATGTCTATTCTAAACTTGGCAGATGAAACAGATCTGCA
TTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAAAAAGCTTATTTCTTTCTTCAGATATTCCTCTTTCAACTTCCCCTTCTTTCAGC
TGGTTTAAATTAATAGACATTGCTTCTAGTAAGATATATTGAAATAAATAAAAACTTTGG
CTAGAAAAATTAATGGGAGAGCAGTAGTTAGACCTTATGCCTTACTCAGATCACAGAATG
TACTCCAGATGTCTGAGTTTATCTTCCTCTCCACTTTGCCATCTCCCTCAATTTGGTTTG
AAGTCAACTGATGTTTATCTTTCCATACTGGTCAATATTAATAATGGATGAATATGTCTC
CTGCATCACTAAAATGGGAAATATGTCTATTCTAAACTTGGCAGATGAAACAGATCTGCA
TTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               25-116, + strand, RNAz p=0.947964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               25-116, + strand, RNAz p=0.947964

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               4-362, gnl|bosTau2|chr7 (62192742-62192380)
               

               
               4-362, gnl|canFam2|chr3 (12655436-12655010)
               

               
               4-362, gnl|dasNov1|scaffold_2443 (3206-3648)
               

               
               4-362, gnl|echTel1|scaffold_266722 (711-1134)
               

               
               4-362, gnl|hg17|chr5 (100199238-100199683)
               

               
               4-362, gnl|Hg17|chr5 (100199682-100199320)
               

               
               4-362, gnl|mm7|chr1 (95461596-95461958)
               

               
               4-362, gnl|monDom2|scaffold_27 (2904824-2905298)
               

               
               4-362, gnl|oryCun1|scaffold_136592 (14971-15399)
               

               
               4-362, gnl|panTro1|chr4 (105981664-105982109)
               

               
               4-362, gnl|rheMac2|chr6 (97103869-97104313)
               

               
               4-362, gnl|rn3|chr9 (95046795-95046399)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-362, gnl|bosTau2|chr7 (62192742-62192380)
               

               
               4-362, gnl|canFam2|chr3 (12655436-12655010)
               

               
               4-362, gnl|dasNov1|scaffold_2443 (3206-3648)
               

               
               4-362, gnl|echTel1|scaffold_266722 (711-1134)
               

               
               4-362, gnl|hg17|chr5 (100199238-100199683)
               

               
               4-362, gnl|Hg17|chr5 (100199682-100199320)
               

               
               4-362, gnl|mm7|chr1 (95461596-95461958)
               

               
               4-362, gnl|monDom2|scaffold_27 (2904824-2905298)
               

               
               4-362, gnl|oryCun1|scaffold_136592 (14971-15399)
               

               
               4-362, gnl|panTro1|chr4 (105981664-105982109)
               

               
               4-362, gnl|rheMac2|chr6 (97103869-97104313)
               

               
               4-362, gnl|rn3|chr9 (95046795-95046399)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	4-362, gnl\|bosTau2\|chr7 (62192742-62192380)
	4-362, gnl\|canFam2\|chr3 (12655436-12655010)
	4-362, gnl\|dasNov1\|scaffold_2443 (3206-3648)
	4-362, gnl\|echTel1\|scaffold_266722 (711-1134)
	4-362, gnl\|hg17\|chr5 (100199238-100199683)
	4-362, gnl\|Hg17\|chr5 (100199682-100199320)
	4-362, gnl\|mm7\|chr1 (95461596-95461958)
	4-362, gnl\|monDom2\|scaffold_27 (2904824-2905298)
	4-362, gnl\|oryCun1\|scaffold_136592 (14971-15399)
	4-362, gnl\|panTro1\|chr4 (105981664-105982109)
	4-362, gnl\|rheMac2\|chr6 (97103869-97104313)
	4-362, gnl\|rn3\|chr9 (95046795-95046399)