Non-Coding RNA Search

rche_0348.y1

Sequence:


               
               CGGGCTGCAGGAATCGAATTCCCCACGAGCATGGTCACTTCCTTCTTTCTGCCCACTCAT
TCTTCCACTGGGCTGGCTTTTCTTAGCGTCTCTGGCTCCGTACTTGCCCCGGCATGCCTT
TTTTCATGATGCCGCTGTCGTAGCCTCACGCAGGAGCTCTGTTTCCATGAAGATCCGCCT
GGTGACTCGCCAACCCTGCTACCATGAACGGGGTCCTGATCCCTCATACGCCCATCGCTG
TGGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGCAGGAATCGAATTCCCCACGAGCATGGTCACTTCCTTCTTTCTGCCCACTCAT
TCTTCCACTGGGCTGGCTTTTCTTAGCGTCTCTGGCTCCGTACTTGCCCCGGCATGCCTT
TTTTCATGATGCCGCTGTCGTAGCCTCACGCAGGAGCTCTGTTTCCATGAAGATCCGCCT
GGTGACTCGCCAACCCTGCTACCATGAACGGGGTCCTGATCCCTCATACGCCCATCGCTG
TGGACTT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               22-247, gnl|bosTau2|chr3 (24380355-24380122)
               

               
               22-247, gnl|canFam2|chr17 (54787095-54787320)
               

               
               22-247, gnl|dasNov1|scaffold_12975 (16543-16260)
               

               
               22-247, gnl|echTel1|scaffold_306679 (11432-11694)
               

               
               22-247, gnl|hg17|chr1 (114160015-114160247)
               

               
               22-247, gnl|Hg17|chr1 (114160061-114160294)
               

               
               22-247, gnl|loxAfr1|scaffold_1119 (80360-80614)
               

               
               22-247, gnl|mm7|chr3 (103603327-103603078)
               

               
               22-247, gnl|Mm7|chr3 (103603258-103603029)
               

               
               22-247, gnl|monDom2|scaffold_0 (1133068-1132950)
               

               
               22-247, gnl|oryCun1|scaffold_207979 (44480-44699)
               

               
               22-247, gnl|panTro1|chr1 (113948467-113948699)
               

               
               22-247, gnl|rheMac2|chr1 (116901255-116901487)
               

               
               22-247, gnl|rn3|chr2 (198996915-198996666)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-247, gnl|bosTau2|chr3 (24380355-24380122)
               

               
               22-247, gnl|canFam2|chr17 (54787095-54787320)
               

               
               22-247, gnl|dasNov1|scaffold_12975 (16543-16260)
               

               
               22-247, gnl|echTel1|scaffold_306679 (11432-11694)
               

               
               22-247, gnl|hg17|chr1 (114160015-114160247)
               

               
               22-247, gnl|Hg17|chr1 (114160061-114160294)
               

               
               22-247, gnl|loxAfr1|scaffold_1119 (80360-80614)
               

               
               22-247, gnl|mm7|chr3 (103603327-103603078)
               

               
               22-247, gnl|Mm7|chr3 (103603258-103603029)
               

               
               22-247, gnl|monDom2|scaffold_0 (1133068-1132950)
               

               
               22-247, gnl|oryCun1|scaffold_207979 (44480-44699)
               

               
               22-247, gnl|panTro1|chr1 (113948467-113948699)
               

               
               22-247, gnl|rheMac2|chr1 (116901255-116901487)
               

               
               22-247, gnl|rn3|chr2 (198996915-198996666)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	22-247, gnl\|bosTau2\|chr3 (24380355-24380122)
	22-247, gnl\|canFam2\|chr17 (54787095-54787320)
	22-247, gnl\|dasNov1\|scaffold_12975 (16543-16260)
	22-247, gnl\|echTel1\|scaffold_306679 (11432-11694)
	22-247, gnl\|hg17\|chr1 (114160015-114160247)
	22-247, gnl\|Hg17\|chr1 (114160061-114160294)
	22-247, gnl\|loxAfr1\|scaffold_1119 (80360-80614)
	22-247, gnl\|mm7\|chr3 (103603327-103603078)
	22-247, gnl\|Mm7\|chr3 (103603258-103603029)
	22-247, gnl\|monDom2\|scaffold_0 (1133068-1132950)
	22-247, gnl\|oryCun1\|scaffold_207979 (44480-44699)
	22-247, gnl\|panTro1\|chr1 (113948467-113948699)
	22-247, gnl\|rheMac2\|chr1 (116901255-116901487)
	22-247, gnl\|rn3\|chr2 (198996915-198996666)