Non-Coding RNA Search

rcje07_i12.y1

Sequence:


               
               AGGATGTCACCTCCCCGCATGTCCCTCACAGTCTGGCATAGGTGCTGTGTACACACAGGG
AAACACCCTGTGTACACAGCCGCAGCTGTCAGTGGCACCCACTCCCGATGGGAGGCCCCA
GGTCACCCTCTGCTCTGAACTGGCTAGAACAGGCTGTTCCTGCATTAAACTGGGAGAAAA
GGGAGAATTCAGCATCTGGTGATGGTATTTGTTTTCATGAGTTTGGAGTAACCACATGAT
TTATAAATAGTGAAAGGAAGCGGAGGATGAAGGCAGTTGTAGGCATTTGTCACACATGAA
AAGTACACTGCTAAGAGCTCCAttgtggctcagtgggttaagaacccaactagtatccat
gaggatgcaggttcaatccttggcctcacttagtgggttaaggatcaggcattgctgcaa
gctcagattcggctcggatcctgcattgttgtggccatggtgtaggcctcagctgcagct
ccaattcaacccctagcctgggaccttccctatgctccaggtgcagccctaagaagacaa
gaaaaaTTAATTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGATGTCACCTCCCCGCATGTCCCTCACAGTCTGGCATAGGTGCTGTGTACACACAGGG
AAACACCCTGTGTACACAGCCGCAGCTGTCAGTGGCACCCACTCCCGATGGGAGGCCCCA
GGTCACCCTCTGCTCTGAACTGGCTAGAACAGGCTGTTCCTGCATTAAACTGGGAGAAAA
GGGAGAATTCAGCATCTGGTGATGGTATTTGTTTTCATGAGTTTGGAGTAACCACATGAT
TTATAAATAGTGAAAGGAAGCGGAGGATGAAGGCAGTTGTAGGCATTTGTCACACATGAA
AAGTACACTGCTAAGAGCTCCAttgtggctcagtgggttaagaacccaactagtatccat
gaggatgcaggttcaatccttggcctcacttagtgggttaaggatcaggcattgctgcaa
gctcagattcggctcggatcctgcattgttgtggccatggtgtaggcctcagctgcagct
ccaattcaacccctagcctgggaccttccctatgctccaggtgcagccctaagaagacaa
gaaaaaTTAATTAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-160, - strand, RNAz p=0.97833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-160, - strand, RNAz p=0.97833

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-314, gnl|bosTau2|chr6 (15608590-15608866)
               

               
               42-314, gnl|Hg17|chr4 (90524009-90523734)
               

               
               42-314, gnl|Mm7|chr6 (59319831-59319583)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-314, gnl|bosTau2|chr6 (15608590-15608866)
               

               
               42-314, gnl|Hg17|chr4 (90524009-90523734)
               

               
               42-314, gnl|Mm7|chr6 (59319831-59319583)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	42-314, gnl\|bosTau2\|chr6 (15608590-15608866)
	42-314, gnl\|Hg17\|chr4 (90524009-90523734)
	42-314, gnl\|Mm7\|chr6 (59319831-59319583)