Non-Coding RNA Search

rcje07_l17.y1

Sequence:


               
               CCTCTGCTTTCGGGCGCTCTCATCCGAGGCCCCTCCAACCCAGGCCGCGGCCGTGCGAGA
CGCCTTCCTGAGCTTCTTTCGAGACCGCCATGGCCACCGCCTGGTGCCGTCCGCTTCGGT
GCGGCCCCGCGGCGACCCCACTTTGCTCTTCGTCAACGCGGGCATGAACCAGGTAGGAGC
TGAGCCACACTGACCGGGGCGGAGTTTGTGGGGTTCTTCGGGATTGGGCAAAGGAAGCGA
AGGGCGGAGCTCTTAGCTTTCGGGGAGCTGGGGGGAAAGCAGGTTGTGCGTGGTTAGGCT
AAGAGATTGGGGCGCTAATTAGGGCTCAGGGTGGGCTGGACCCGGCAGCTTTGGAGTTGA
GATCGAGTTTTAGGTCCAGGAACAGCGGGTATGGAGTCCCATGGAGGCAGACTGGTGGGG
GAAGTCTGGCTTTATTTACTAGTTCTTTAAAGATAACCGGTTCATTAAAATAAACGTTGA
GCACATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTGCTTTCGGGCGCTCTCATCCGAGGCCCCTCCAACCCAGGCCGCGGCCGTGCGAGA
CGCCTTCCTGAGCTTCTTTCGAGACCGCCATGGCCACCGCCTGGTGCCGTCCGCTTCGGT
GCGGCCCCGCGGCGACCCCACTTTGCTCTTCGTCAACGCGGGCATGAACCAGGTAGGAGC
TGAGCCACACTGACCGGGGCGGAGTTTGTGGGGTTCTTCGGGATTGGGCAAAGGAAGCGA
AGGGCGGAGCTCTTAGCTTTCGGGGAGCTGGGGGGAAAGCAGGTTGTGCGTGGTTAGGCT
AAGAGATTGGGGCGCTAATTAGGGCTCAGGGTGGGCTGGACCCGGCAGCTTTGGAGTTGA
GATCGAGTTTTAGGTCCAGGAACAGCGGGTATGGAGTCCCATGGAGGCAGACTGGTGGGG
GAAGTCTGGCTTTATTTACTAGTTCTTTAAAGATAACCGGTTCATTAAAATAAACGTTGA
GCACATGCT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               6-433, gnl|bosTau2|chr23 (17496473-17496909)
               

               
               6-433, gnl|canFam2|chr12 (15721278-15721615)
               

               
               6-433, gnl|dasNov1|scaffold_90060 (7781-8088)
               

               
               6-433, gnl|fr1|chrUn (292727773-292728100)
               

               
               6-433, gnl|hg17|chr6 (44388477-44388791)
               

               
               6-433, gnl|Hg17|chr6 (44388968-44388557)
               

               
               6-433, gnl|loxAfr1|scaffold_31015 (41766-42056)
               

               
               6-433, gnl|mm7|chr17 (43636773-43636492)
               

               
               6-433, gnl|monDom2|scaffold_0 (196474626-196474300)
               

               
               6-433, gnl|oryCun1|scaffold_154467 (4156-4457)
               

               
               6-433, gnl|panTro1|chr5 (44997133-44997447)
               

               
               6-433, gnl|rheMac2|chr4 (44232264-44232602)
               

               
               6-433, gnl|rn3|chr9 (11093226-11093507)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-433, gnl|bosTau2|chr23 (17496473-17496909)
               

               
               6-433, gnl|canFam2|chr12 (15721278-15721615)
               

               
               6-433, gnl|dasNov1|scaffold_90060 (7781-8088)
               

               
               6-433, gnl|fr1|chrUn (292727773-292728100)
               

               
               6-433, gnl|hg17|chr6 (44388477-44388791)
               

               
               6-433, gnl|Hg17|chr6 (44388968-44388557)
               

               
               6-433, gnl|loxAfr1|scaffold_31015 (41766-42056)
               

               
               6-433, gnl|mm7|chr17 (43636773-43636492)
               

               
               6-433, gnl|monDom2|scaffold_0 (196474626-196474300)
               

               
               6-433, gnl|oryCun1|scaffold_154467 (4156-4457)
               

               
               6-433, gnl|panTro1|chr5 (44997133-44997447)
               

               
               6-433, gnl|rheMac2|chr4 (44232264-44232602)
               

               
               6-433, gnl|rn3|chr9 (11093226-11093507)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cje (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	6-433, gnl\|bosTau2\|chr23 (17496473-17496909)
	6-433, gnl\|canFam2\|chr12 (15721278-15721615)
	6-433, gnl\|dasNov1\|scaffold_90060 (7781-8088)
	6-433, gnl\|fr1\|chrUn (292727773-292728100)
	6-433, gnl\|hg17\|chr6 (44388477-44388791)
	6-433, gnl\|Hg17\|chr6 (44388968-44388557)
	6-433, gnl\|loxAfr1\|scaffold_31015 (41766-42056)
	6-433, gnl\|mm7\|chr17 (43636773-43636492)
	6-433, gnl\|monDom2\|scaffold_0 (196474626-196474300)
	6-433, gnl\|oryCun1\|scaffold_154467 (4156-4457)
	6-433, gnl\|panTro1\|chr5 (44997133-44997447)
	6-433, gnl\|rheMac2\|chr4 (44232264-44232602)
	6-433, gnl\|rn3\|chr9 (11093226-11093507)