Non-Coding RNA Search

rcje31_g10.y1

Sequence:


               
               TGCGCGCCTCTTCGGAATTGGACGAGGAGCGGTGCCGCATATTGCAGATAAAGGTTGAAT
CAGAAAGTGTTCAAATAAACCTTATTTTCTCCCACAAATTGGGAGAGAGTAACTAAATCT
TCCTAAACATCAGCAACGTTAACTTTTATCAGAACTATGAAAAATTTAAGGTTTTTAAAA
ATGTTATTTTAggagttcccgtcgtggtgcagtggttaacgaatccgactaggaaccatg
aggtttcgggttcggtccctgaccttgctcagtgggttaacgatctggtgttgccgtgag
ctgtggtgtaggttgcagacgcggctcagatcctgcgttgctgtggctctggcg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCGCCTCTTCGGAATTGGACGAGGAGCGGTGCCGCATATTGCAGATAAAGGTTGAAT
CAGAAAGTGTTCAAATAAACCTTATTTTCTCCCACAAATTGGGAGAGAGTAACTAAATCT
TCCTAAACATCAGCAACGTTAACTTTTATCAGAACTATGAAAAATTTAAGGTTTTTAAAA
ATGTTATTTTAggagttcccgtcgtggtgcagtggttaacgaatccgactaggaaccatg
aggtttcgggttcggtccctgaccttgctcagtgggttaacgatctggtgttgccgtgag
ctgtggtgtaggttgcagacgcggctcagatcctgcgttgctgtggctctggcg

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               33-190, - strand, RNAz p=0.999106

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               33-190, - strand, RNAz p=0.999106

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               46-149, + strand, RNAmicro p=0.999998
               

               
               35-176, - strand, RNAmicro p=0.971652

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-149, + strand, RNAmicro p=0.999998
               

               
               35-176, - strand, RNAmicro p=0.971652

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               33-190, gnl|bosTau2|chr16 (14415215-14415059)
               

               
               33-190, gnl|canFam2|chr38 (26773034-26772752)
               

               
               33-190, gnl|canFam2|chr38 (26772762-26773034)
               

               
               33-190, gnl|canFam2|chr38 (26773034-26772762)
               

               
               33-190, gnl|dasNov1|scaffold_8085 (67613-67269)
               

               
               33-190, gnl|dasNov1|scaffold_8085 (67269-67613)
               

               
               33-190, gnl|dasNov1|scaffold_8085 (67613-67269)
               

               
               33-190, gnl|echTel1|scaffold_240116 (5846-5518)
               

               
               33-190, gnl|echTel1|scaffold_240116 (5518-5846)
               

               
               33-190, gnl|echTel1|scaffold_240116 (5846-5518)
               

               
               33-190, gnl|hg17|chr1 (219450282-219450630)
               

               
               33-190, gnl|Hg17|chr1 (219450365-219450514)
               

               
               33-190, gnl|hg17|chr1_random (2750512-2750856)
               

               
               33-190, gnl|hg17|chr1_random (2453561-2453899)
               

               
               33-190, gnl|panTro1|chr1 (203308292-203308642)
               

               
               33-190, gnl|panTro1|chr1 (203308634-203308292)
               

               
               33-190, gnl|panTro1|chr1 (203308292-203308634)
               

               
               33-190, gnl|rheMac2|chr1 (147375621-147375245)
               

               
               33-190, gnl|rheMac2|chr1 (147375255-147375621)
               

               
               33-190, gnl|rheMac2|chr1 (147375621-147375255)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-190, gnl|bosTau2|chr16 (14415215-14415059)
               

               
               33-190, gnl|canFam2|chr38 (26773034-26772752)
               

               
               33-190, gnl|canFam2|chr38 (26772762-26773034)
               

               
               33-190, gnl|canFam2|chr38 (26773034-26772762)
               

               
               33-190, gnl|dasNov1|scaffold_8085 (67613-67269)
               

               
               33-190, gnl|dasNov1|scaffold_8085 (67269-67613)
               

               
               33-190, gnl|dasNov1|scaffold_8085 (67613-67269)
               

               
               33-190, gnl|echTel1|scaffold_240116 (5846-5518)
               

               
               33-190, gnl|echTel1|scaffold_240116 (5518-5846)
               

               
               33-190, gnl|echTel1|scaffold_240116 (5846-5518)
               

               
               33-190, gnl|hg17|chr1 (219450282-219450630)
               

               
               33-190, gnl|Hg17|chr1 (219450365-219450514)
               

               
               33-190, gnl|hg17|chr1_random (2750512-2750856)
               

               
               33-190, gnl|hg17|chr1_random (2453561-2453899)
               

               
               33-190, gnl|panTro1|chr1 (203308292-203308642)
               

               
               33-190, gnl|panTro1|chr1 (203308634-203308292)
               

               
               33-190, gnl|panTro1|chr1 (203308292-203308634)
               

               
               33-190, gnl|rheMac2|chr1 (147375621-147375245)
               

               
               33-190, gnl|rheMac2|chr1 (147375255-147375621)
               

               
               33-190, gnl|rheMac2|chr1 (147375621-147375255)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	46-149, + strand, RNAmicro p=0.999998
	35-176, - strand, RNAmicro p=0.971652

	33-190, gnl\|bosTau2\|chr16 (14415215-14415059)
	33-190, gnl\|canFam2\|chr38 (26773034-26772752)
	33-190, gnl\|canFam2\|chr38 (26772762-26773034)
	33-190, gnl\|canFam2\|chr38 (26773034-26772762)
	33-190, gnl\|dasNov1\|scaffold_8085 (67613-67269)
	33-190, gnl\|dasNov1\|scaffold_8085 (67269-67613)
	33-190, gnl\|dasNov1\|scaffold_8085 (67613-67269)
	33-190, gnl\|echTel1\|scaffold_240116 (5846-5518)
	33-190, gnl\|echTel1\|scaffold_240116 (5518-5846)
	33-190, gnl\|echTel1\|scaffold_240116 (5846-5518)
	33-190, gnl\|hg17\|chr1 (219450282-219450630)
	33-190, gnl\|Hg17\|chr1 (219450365-219450514)
	33-190, gnl\|hg17\|chr1_random (2750512-2750856)
	33-190, gnl\|hg17\|chr1_random (2453561-2453899)
	33-190, gnl\|panTro1\|chr1 (203308292-203308642)
	33-190, gnl\|panTro1\|chr1 (203308634-203308292)
	33-190, gnl\|panTro1\|chr1 (203308292-203308634)
	33-190, gnl\|rheMac2\|chr1 (147375621-147375245)
	33-190, gnl\|rheMac2\|chr1 (147375255-147375621)
	33-190, gnl\|rheMac2\|chr1 (147375621-147375255)