Non-Coding RNA Search

rcje31_k13.y1

Sequence:


               
               GAGGTAAATTCATGCTATAATAGTATAACTATCATTTGATTTTTTTTTTTTAATGGACTT
ATTTAGGTAGAATCCTAAATCAATGAAAAATAATTTTCATGAAGTTTCTCATTTAATCTC
TAATAAAACTATGAAGGATAACAACAACAAAAAAACCTGTGTTAGGAAGCTGATGCTCTC
AAAATTCAATACAGTTTTCTAACTTGATTCTACATGCTTAATGGAGAAGACATATTTTTA
TGTGATCATATTTAGCACCATGCCATTTGTCTGGTAGATTTATATAGGATTTCATAGACT
ACACATTTCCATGCTGGGCCTTTTAGCATGCCTTATTAAATAACTTATTGAAGCCACCAG
AGTTTAAATGAACACACATGCGGTTTCAAAATTTCTCATAGCTAGAAAGACGTTTGTGgg
agtttccatcgtggcttagtggaaacaaatctgactagcatccatgaggacataggttca
atccctggcctctctcagtgggttaaATATCTGGTGATCTGTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTAAATTCATGCTATAATAGTATAACTATCATTTGATTTTTTTTTTTTAATGGACTT
ATTTAGGTAGAATCCTAAATCAATGAAAAATAATTTTCATGAAGTTTCTCATTTAATCTC
TAATAAAACTATGAAGGATAACAACAACAAAAAAACCTGTGTTAGGAAGCTGATGCTCTC
AAAATTCAATACAGTTTTCTAACTTGATTCTACATGCTTAATGGAGAAGACATATTTTTA
TGTGATCATATTTAGCACCATGCCATTTGTCTGGTAGATTTATATAGGATTTCATAGACT
ACACATTTCCATGCTGGGCCTTTTAGCATGCCTTATTAAATAACTTATTGAAGCCACCAG
AGTTTAAATGAACACACATGCGGTTTCAAAATTTCTCATAGCTAGAAAGACGTTTGTGgg
agtttccatcgtggcttagtggaaacaaatctgactagcatccatgaggacataggttca
atccctggcctctctcagtgggttaaATATCTGGTGATCTGTGGT

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               5-417, gnl|bosTau2|chr16 (23617727-23617307)
               

               
               5-417, gnl|canFam2|chr7 (37284223-37284630)
               

               
               5-417, gnl|echTel1|scaffold_177104 (6899-6518)
               

               
               5-417, gnl|hg17|chr1 (239676252-239676633)
               

               
               5-417, gnl|Hg17|chr1 (239676766-239676347)
               

               
               5-417, gnl|mm7|chr1 (176736928-176737202)
               

               
               5-417, gnl|monDom2|scaffold_13 (40716035-40715590)
               

               
               5-417, gnl|panTro1|chr1 (223667503-223667881)
               

               
               5-417, gnl|rheMac2|chr1 (213919605-213919216)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-417, gnl|bosTau2|chr16 (23617727-23617307)
               

               
               5-417, gnl|canFam2|chr7 (37284223-37284630)
               

               
               5-417, gnl|echTel1|scaffold_177104 (6899-6518)
               

               
               5-417, gnl|hg17|chr1 (239676252-239676633)
               

               
               5-417, gnl|Hg17|chr1 (239676766-239676347)
               

               
               5-417, gnl|mm7|chr1 (176736928-176737202)
               

               
               5-417, gnl|monDom2|scaffold_13 (40716035-40715590)
               

               
               5-417, gnl|panTro1|chr1 (223667503-223667881)
               

               
               5-417, gnl|rheMac2|chr1 (213919605-213919216)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	5-417, gnl\|bosTau2\|chr16 (23617727-23617307)
	5-417, gnl\|canFam2\|chr7 (37284223-37284630)
	5-417, gnl\|echTel1\|scaffold_177104 (6899-6518)
	5-417, gnl\|hg17\|chr1 (239676252-239676633)
	5-417, gnl\|Hg17\|chr1 (239676766-239676347)
	5-417, gnl\|mm7\|chr1 (176736928-176737202)
	5-417, gnl\|monDom2\|scaffold_13 (40716035-40715590)
	5-417, gnl\|panTro1\|chr1 (223667503-223667881)
	5-417, gnl\|rheMac2\|chr1 (213919605-213919216)