Non-Coding RNA Search

rcje32_k16.y1

Sequence:


               
               tttgccgatgtgattaagttaaagagcttgagatgggaccattaccctggaccatacagg
tgggcccTAAATACAGTCACATATATCATTATAAAAGGGAAGCAGGGGATCTGACGCACG
CATGGGAGTTGGAAAGGCAGAGTGATTGTGGAGGCAGAGGCTTCAGTGATCggccacaaa
ccaggaaatgccagctgctcccagatgctggaaaaggcaaggaacgctcttgccccggag
cctccagagaaagcatagccctggtgaccccttggtttggcccagtgatactggtttcag
atttctggcctccagaattgtgggagaataagtttctgttggtttaagccacaagtttgt
ggtaatttgttatagcaatcacaggaaaccaataGAGTGACTTCGTGACCTCCTTATCTC
TAAAATGAGAATATTAATGGTAATACCTAGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               tttgccgatgtgattaagttaaagagcttgagatgggaccattaccctggaccatacagg
tgggcccTAAATACAGTCACATATATCATTATAAAAGGGAAGCAGGGGATCTGACGCACG
CATGGGAGTTGGAAAGGCAGAGTGATTGTGGAGGCAGAGGCTTCAGTGATCggccacaaa
ccaggaaatgccagctgctcccagatgctggaaaaggcaaggaacgctcttgccccggag
cctccagagaaagcatagccctggtgaccccttggtttggcccagtgatactggtttcag
atttctggcctccagaattgtgggagaataagtttctgttggtttaagccacaagtttgt
ggtaatttgttatagcaatcacaggaaaccaataGAGTGACTTCGTGACCTCCTTATCTC
TAAAATGAGAATATTAATGGTAATACCTAGAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               171-289, - strand, RNAz p=0.783038

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-289, - strand, RNAz p=0.783038

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               19-454, gnl|bosTau2|chr18 (16113050-16113484)
               

               
               19-454, gnl|Hg17|chr16 (45356817-45356414)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-454, gnl|bosTau2|chr18 (16113050-16113484)
               

               
               19-454, gnl|Hg17|chr16 (45356817-45356414)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	19-454, gnl\|bosTau2\|chr18 (16113050-16113484)
	19-454, gnl\|Hg17\|chr16 (45356817-45356414)