Non-Coding RNA Search

rcje33_b12.y1

Sequence:


               
               GACAAGGGCTGCTTTTTCCCTCTCCCCCCCCCCACTTTAAAACAAAGCTGCGATTCATTC
CCTCTTCCCCTGCAACGCGGTTGGGTGGGATGGGCAGGCGAGAAGGCCGTTTTCCGAGCC
CGGGTCTGCGGGTTCCTCCCTGAAACGCGGTGTCAGATGGTTACTGATTAATATTTTGGA
AAGGCCACGGCGGCGGGCAGCGGGTGAGTCTCTAATCTTCTAAAAGGGGTTCCTATAGAA
ACGCGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACAAGGGCTGCTTTTTCCCTCTCCCCCCCCCCACTTTAAAACAAAGCTGCGATTCATTC
CCTCTTCCCCTGCAACGCGGTTGGGTGGGATGGGCAGGCGAGAAGGCCGTTTTCCGAGCC
CGGGTCTGCGGGTTCCTCCCTGAAACGCGGTGTCAGATGGTTACTGATTAATATTTTGGA
AAGGCCACGGCGGCGGGCAGCGGGTGAGTCTCTAATCTTCTAAAAGGGGTTCCTATAGAA
ACGCGGGC

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-248, gnl|bosTau2|chr25 (40728612-40728862)
               

               
               1-248, gnl|canFam2|chr6 (15528548-15527608)
               

               
               1-248, gnl|hg17|chr7 (5237245-5238173)
               

               
               1-248, gnl|Hg17|chr7 (5237318-5237569)
               

               
               1-248, gnl|mm7|chr5 (141852576-141853518)
               

               
               1-248, gnl|Mm7|chr5 (141852642-141852908)
               

               
               1-248, gnl|monDom2|scaffold_17 (5277420-5278465)
               

               
               1-248, gnl|panTro1|chr6 (5661567-5662500)
               

               
               1-248, gnl|rheMac2|chr3 (43577013-43576084)
               

               
               1-248, gnl|rn3|chr12 (12172010-12171027)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-248, gnl|bosTau2|chr25 (40728612-40728862)
               

               
               1-248, gnl|canFam2|chr6 (15528548-15527608)
               

               
               1-248, gnl|hg17|chr7 (5237245-5238173)
               

               
               1-248, gnl|Hg17|chr7 (5237318-5237569)
               

               
               1-248, gnl|mm7|chr5 (141852576-141853518)
               

               
               1-248, gnl|Mm7|chr5 (141852642-141852908)
               

               
               1-248, gnl|monDom2|scaffold_17 (5277420-5278465)
               

               
               1-248, gnl|panTro1|chr6 (5661567-5662500)
               

               
               1-248, gnl|rheMac2|chr3 (43577013-43576084)
               

               
               1-248, gnl|rn3|chr12 (12172010-12171027)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	1-248, gnl\|bosTau2\|chr25 (40728612-40728862)
	1-248, gnl\|canFam2\|chr6 (15528548-15527608)
	1-248, gnl\|hg17\|chr7 (5237245-5238173)
	1-248, gnl\|Hg17\|chr7 (5237318-5237569)
	1-248, gnl\|mm7\|chr5 (141852576-141853518)
	1-248, gnl\|Mm7\|chr5 (141852642-141852908)
	1-248, gnl\|monDom2\|scaffold_17 (5277420-5278465)
	1-248, gnl\|panTro1\|chr6 (5661567-5662500)
	1-248, gnl\|rheMac2\|chr3 (43577013-43576084)
	1-248, gnl\|rn3\|chr12 (12172010-12171027)