Non-Coding RNA Search

rcje33_b8.y1

Sequence:


               
               GCGCCGTCTTTCCATCGTCCGAGGCGTCTGCCCCGGCTGCACAGGAATGAGAATGTACTT
GTGGCCTTGGATGTGAAGCAGTCAGTCCTGTGTTGCTGTTAGGTGGCCTCAGGGACTGAT
GTTGTGGGAAGCATGGACCTAATGAACGGGCAGGCAAGCAGTGTTAATATTGCTGCTGCT
GCTTCTGAGAAAAGTAGCAGTTCTGAATCATTAAGTGACAGAGGTTCTGAATTGAAGAAA
AGTTTTGATGCTGTGGTATTTGATGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCCGTCTTTCCATCGTCCGAGGCGTCTGCCCCGGCTGCACAGGAATGAGAATGTACTT
GTGGCCTTGGATGTGAAGCAGTCAGTCCTGTGTTGCTGTTAGGTGGCCTCAGGGACTGAT
GTTGTGGGAAGCATGGACCTAATGAACGGGCAGGCAAGCAGTGTTAATATTGCTGCTGCT
GCTTCTGAGAAAAGTAGCAGTTCTGAATCATTAAGTGACAGAGGTTCTGAATTGAAGAAA
AGTTTTGATGCTGTGGTATTTGATGTTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, + strand, RNAz p=0.636904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, + strand, RNAz p=0.636904

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018037, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018037, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               41-207, gnl|bosTau2|chr16 (42474477-42474641)
               

               
               41-207, gnl|canFam2|chr7 (23958407-23958169)
               

               
               41-207, gnl|dasNov1|scaffold_20209 (43092-43313)
               

               
               41-207, gnl|echTel1|scaffold_267046 (3414-3190)
               

               
               41-207, gnl|hg17|chr1 (175477434-175477662)
               

               
               41-207, gnl|Hg17|chr1 (175477470-175477629)
               

               
               41-207, gnl|loxAfr1|scaffold_1564 (133547-133772)
               

               
               41-207, gnl|mm7|chr1 (156870426-156870196)
               

               
               41-207, gnl|Mm7|chr1 (156870385-156870225)
               

               
               41-207, gnl|monDom2|scaffold_16 (31406831-31407066)
               

               
               41-207, gnl|oryCun1|scaffold_175235 (40550-40783)
               

               
               41-207, gnl|panTro1|chr1 (157883670-157883898)
               

               
               41-207, gnl|rheMac2|chr1 (191939864-191939636)
               

               
               41-207, gnl|rn3|chr13 (72120548-72120314)
               

               
               41-207, gnl|xenTro1|scaffold_126 (868690-868472)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-207, gnl|bosTau2|chr16 (42474477-42474641)
               

               
               41-207, gnl|canFam2|chr7 (23958407-23958169)
               

               
               41-207, gnl|dasNov1|scaffold_20209 (43092-43313)
               

               
               41-207, gnl|echTel1|scaffold_267046 (3414-3190)
               

               
               41-207, gnl|hg17|chr1 (175477434-175477662)
               

               
               41-207, gnl|Hg17|chr1 (175477470-175477629)
               

               
               41-207, gnl|loxAfr1|scaffold_1564 (133547-133772)
               

               
               41-207, gnl|mm7|chr1 (156870426-156870196)
               

               
               41-207, gnl|Mm7|chr1 (156870385-156870225)
               

               
               41-207, gnl|monDom2|scaffold_16 (31406831-31407066)
               

               
               41-207, gnl|oryCun1|scaffold_175235 (40550-40783)
               

               
               41-207, gnl|panTro1|chr1 (157883670-157883898)
               

               
               41-207, gnl|rheMac2|chr1 (191939864-191939636)
               

               
               41-207, gnl|rn3|chr13 (72120548-72120314)
               

               
               41-207, gnl|xenTro1|scaffold_126 (868690-868472)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	41-207, gnl\|bosTau2\|chr16 (42474477-42474641)
	41-207, gnl\|canFam2\|chr7 (23958407-23958169)
	41-207, gnl\|dasNov1\|scaffold_20209 (43092-43313)
	41-207, gnl\|echTel1\|scaffold_267046 (3414-3190)
	41-207, gnl\|hg17\|chr1 (175477434-175477662)
	41-207, gnl\|Hg17\|chr1 (175477470-175477629)
	41-207, gnl\|loxAfr1\|scaffold_1564 (133547-133772)
	41-207, gnl\|mm7\|chr1 (156870426-156870196)
	41-207, gnl\|Mm7\|chr1 (156870385-156870225)
	41-207, gnl\|monDom2\|scaffold_16 (31406831-31407066)
	41-207, gnl\|oryCun1\|scaffold_175235 (40550-40783)
	41-207, gnl\|panTro1\|chr1 (157883670-157883898)
	41-207, gnl\|rheMac2\|chr1 (191939864-191939636)
	41-207, gnl\|rn3\|chr13 (72120548-72120314)
	41-207, gnl\|xenTro1\|scaffold_126 (868690-868472)