Non-Coding RNA Search

rcje36_c8.y1

Sequence:


               
               AGAATCAACAACATCTCTAGTATCATCTTCAACATCTGCATACTCTTCCTTCCCTGTAGA
TGTTGTGGTTTATGTACGAGTTCAGCCCTCACAGATCAAGTTTAGCTGCCTACCAGTATC
AAGAGTAGAATGCATGCTAAAGCTGCCATCCCTGGACTTGGTGTTTTCTTCAAACCGAGG
AGAACTAGAGACTTTAGGGACTACATATCCTGCAGAGACTTTATCCCCTGGAGGTAATGC
TCCTCAGAGTGGATCAAAGACCTCTGCAAGCAAAACTGGAATACCAGGTTCGTCGGGATT
GGGCAGCCCTCTTGGCAGAAGTCGACACAGCAGTAGTCAGTCAGACCTGACCAGTTCCAG
CAGCAGCTCATCTGGGTTGAGCTTCACTGCCTGCATGTCTGACTTTTCCCTTTATGTATT
TCATCCATACGGAGCAGGAAAACAAAAAACTGCTGTTTCTGGCCTCACACCTGGATCAGG
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCAACAACATCTCTAGTATCATCTTCAACATCTGCATACTCTTCCTTCCCTGTAGA
TGTTGTGGTTTATGTACGAGTTCAGCCCTCACAGATCAAGTTTAGCTGCCTACCAGTATC
AAGAGTAGAATGCATGCTAAAGCTGCCATCCCTGGACTTGGTGTTTTCTTCAAACCGAGG
AGAACTAGAGACTTTAGGGACTACATATCCTGCAGAGACTTTATCCCCTGGAGGTAATGC
TCCTCAGAGTGGATCAAAGACCTCTGCAAGCAAAACTGGAATACCAGGTTCGTCGGGATT
GGGCAGCCCTCTTGGCAGAAGTCGACACAGCAGTAGTCAGTCAGACCTGACCAGTTCCAG
CAGCAGCTCATCTGGGTTGAGCTTCACTGCCTGCATGTCTGACTTTTCCCTTTATGTATT
TCATCCATACGGAGCAGGAAAACAAAAAACTGCTGTTTCTGGCCTCACACCTGGATCAGG
A

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11359911|pir||T46326

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11359911|pir||T46326

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-289, + strand, RNAz p=0.941558
               

               
               148-289, + strand, RNAz p=0.777551

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-289, + strand, RNAz p=0.941558
               

               
               148-289, + strand, RNAz p=0.777551

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB029032, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB029032, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               69-289, gnl|bosTau2|chr17 (20540223-20540004)
               

               
               69-289, gnl|canFam2|chr19 (20872766-20872614)
               

               
               69-289, gnl|danRer3|chrUn (61704355-61704492)
               

               
               69-289, gnl|echTel1|scaffold_117585 (486-653)
               

               
               69-289, gnl|fr1|chrUn (300914397-300914514)
               

               
               69-289, gnl|galGal2|chr4 (54284820-54284667)
               

               
               69-289, gnl|hg17|chr4 (123617947-123618099)
               

               
               69-289, gnl|Hg17|chr4 (123617951-123618170)
               

               
               69-289, gnl|loxAfr1|scaffold_2700 (98707-98863)
               

               
               69-289, gnl|mm7|chr3 (36845310-36845466)
               

               
               69-289, gnl|Mm7|chr3 (36845320-36845537)
               

               
               69-289, gnl|monDom2|scaffold_32 (4884309-4884153)
               

               
               69-289, gnl|oryCun1|scaffold_180922 (4031-3875)
               

               
               69-289, gnl|panTro1|chr3 (140447947-140448099)
               

               
               69-289, gnl|rheMac2|chr5 (114711529-114711681)
               

               
               69-289, gnl|rn3|chr2 (123497376-123497532)
               

               
               69-289, gnl|tetNig1|chr10 (1975597-1975471)
               

               
               69-289, gnl|xenTro1|scaffold_762 (607357-607207)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-289, gnl|bosTau2|chr17 (20540223-20540004)
               

               
               69-289, gnl|canFam2|chr19 (20872766-20872614)
               

               
               69-289, gnl|danRer3|chrUn (61704355-61704492)
               

               
               69-289, gnl|echTel1|scaffold_117585 (486-653)
               

               
               69-289, gnl|fr1|chrUn (300914397-300914514)
               

               
               69-289, gnl|galGal2|chr4 (54284820-54284667)
               

               
               69-289, gnl|hg17|chr4 (123617947-123618099)
               

               
               69-289, gnl|Hg17|chr4 (123617951-123618170)
               

               
               69-289, gnl|loxAfr1|scaffold_2700 (98707-98863)
               

               
               69-289, gnl|mm7|chr3 (36845310-36845466)
               

               
               69-289, gnl|Mm7|chr3 (36845320-36845537)
               

               
               69-289, gnl|monDom2|scaffold_32 (4884309-4884153)
               

               
               69-289, gnl|oryCun1|scaffold_180922 (4031-3875)
               

               
               69-289, gnl|panTro1|chr3 (140447947-140448099)
               

               
               69-289, gnl|rheMac2|chr5 (114711529-114711681)
               

               
               69-289, gnl|rn3|chr2 (123497376-123497532)
               

               
               69-289, gnl|tetNig1|chr10 (1975597-1975471)
               

               
               69-289, gnl|xenTro1|scaffold_762 (607357-607207)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	120-289, + strand, RNAz p=0.941558
	148-289, + strand, RNAz p=0.777551

	69-289, gnl\|bosTau2\|chr17 (20540223-20540004)
	69-289, gnl\|canFam2\|chr19 (20872766-20872614)
	69-289, gnl\|danRer3\|chrUn (61704355-61704492)
	69-289, gnl\|echTel1\|scaffold_117585 (486-653)
	69-289, gnl\|fr1\|chrUn (300914397-300914514)
	69-289, gnl\|galGal2\|chr4 (54284820-54284667)
	69-289, gnl\|hg17\|chr4 (123617947-123618099)
	69-289, gnl\|Hg17\|chr4 (123617951-123618170)
	69-289, gnl\|loxAfr1\|scaffold_2700 (98707-98863)
	69-289, gnl\|mm7\|chr3 (36845310-36845466)
	69-289, gnl\|Mm7\|chr3 (36845320-36845537)
	69-289, gnl\|monDom2\|scaffold_32 (4884309-4884153)
	69-289, gnl\|oryCun1\|scaffold_180922 (4031-3875)
	69-289, gnl\|panTro1\|chr3 (140447947-140448099)
	69-289, gnl\|rheMac2\|chr5 (114711529-114711681)
	69-289, gnl\|rn3\|chr2 (123497376-123497532)
	69-289, gnl\|tetNig1\|chr10 (1975597-1975471)
	69-289, gnl\|xenTro1\|scaffold_762 (607357-607207)