Non-Coding RNA Search

rcje37_e16.y1

Sequence:


               
               GTGAATTTATAAAGCTCAGGATTGACCTTCTGCAAGCCTTCTCTCAACTTATCTGTACTT
GTAATAGCCTCAAGACAAGCCCTCCACCTGCAATTGCCACAACAATTGCCATGACCTTAG
GGAATGACCTTCAGCGGTGTGGTCGAATCTCCAATCAGATGAAATTGTCCATGGAAGAAT
TCCGAAGCCTTGCTTCCCGATATGGGGATCTGTATCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAATTTATAAAGCTCAGGATTGACCTTCTGCAAGCCTTCTCTCAACTTATCTGTACTT
GTAATAGCCTCAAGACAAGCCCTCCACCTGCAATTGCCACAACAATTGCCATGACCTTAG
GGAATGACCTTCAGCGGTGTGGTCGAATCTCCAATCAGATGAAATTGTCCATGGAAGAAT
TCCGAAGCCTTGCTTCCCGATATGGGGATCTGTATCAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-98, - strand, RNAz p=0.553838

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-98, - strand, RNAz p=0.553838

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-158, gnl|bosTau2|chr16 (53550877-53551034)
               

               
               1-158, gnl|canFam2|chr7 (13218003-13218232)
               

               
               1-158, gnl|danRer3|chr20 (17129901-17129675)
               

               
               1-158, gnl|dasNov1|scaffold_11707 (17239-17010)
               

               
               1-158, gnl|fr1|chrUn (80672686-80672476)
               

               
               1-158, gnl|galGal2|chr3 (18402949-18402732)
               

               
               1-158, gnl|hg17|chr1 (208530235-208530462)
               

               
               1-158, gnl|Hg17|chr1 (208530407-208530250)
               

               
               1-158, gnl|loxAfr1|scaffold_144811 (4213-3984)
               

               
               1-158, gnl|mm7|chr1 (191166736-191166508)
               

               
               1-158, gnl|Mm7|chr1 (191166558-191166715)
               

               
               1-158, gnl|monDom2|scaffold_13 (15778943-15779172)
               

               
               1-158, gnl|oryCun1|scaffold_73426 (318-89)
               

               
               1-158, gnl|panTro1|chr1 (192170819-192171043)
               

               
               1-158, gnl|rheMac2|chr1 (158442086-158441863)
               

               
               1-158, gnl|rn3|chr13 (107876639-107876410)
               

               
               1-158, gnl|tetNig1|chr14 (4200322-4200539)
               

               
               1-158, gnl|xenTro1|scaffold_68 (1541428-1541216)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-158, gnl|bosTau2|chr16 (53550877-53551034)
               

               
               1-158, gnl|canFam2|chr7 (13218003-13218232)
               

               
               1-158, gnl|danRer3|chr20 (17129901-17129675)
               

               
               1-158, gnl|dasNov1|scaffold_11707 (17239-17010)
               

               
               1-158, gnl|fr1|chrUn (80672686-80672476)
               

               
               1-158, gnl|galGal2|chr3 (18402949-18402732)
               

               
               1-158, gnl|hg17|chr1 (208530235-208530462)
               

               
               1-158, gnl|Hg17|chr1 (208530407-208530250)
               

               
               1-158, gnl|loxAfr1|scaffold_144811 (4213-3984)
               

               
               1-158, gnl|mm7|chr1 (191166736-191166508)
               

               
               1-158, gnl|Mm7|chr1 (191166558-191166715)
               

               
               1-158, gnl|monDom2|scaffold_13 (15778943-15779172)
               

               
               1-158, gnl|oryCun1|scaffold_73426 (318-89)
               

               
               1-158, gnl|panTro1|chr1 (192170819-192171043)
               

               
               1-158, gnl|rheMac2|chr1 (158442086-158441863)
               

               
               1-158, gnl|rn3|chr13 (107876639-107876410)
               

               
               1-158, gnl|tetNig1|chr14 (4200322-4200539)
               

               
               1-158, gnl|xenTro1|scaffold_68 (1541428-1541216)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	1-158, gnl\|bosTau2\|chr16 (53550877-53551034)
	1-158, gnl\|canFam2\|chr7 (13218003-13218232)
	1-158, gnl\|danRer3\|chr20 (17129901-17129675)
	1-158, gnl\|dasNov1\|scaffold_11707 (17239-17010)
	1-158, gnl\|fr1\|chrUn (80672686-80672476)
	1-158, gnl\|galGal2\|chr3 (18402949-18402732)
	1-158, gnl\|hg17\|chr1 (208530235-208530462)
	1-158, gnl\|Hg17\|chr1 (208530407-208530250)
	1-158, gnl\|loxAfr1\|scaffold_144811 (4213-3984)
	1-158, gnl\|mm7\|chr1 (191166736-191166508)
	1-158, gnl\|Mm7\|chr1 (191166558-191166715)
	1-158, gnl\|monDom2\|scaffold_13 (15778943-15779172)
	1-158, gnl\|oryCun1\|scaffold_73426 (318-89)
	1-158, gnl\|panTro1\|chr1 (192170819-192171043)
	1-158, gnl\|rheMac2\|chr1 (158442086-158441863)
	1-158, gnl\|rn3\|chr13 (107876639-107876410)
	1-158, gnl\|tetNig1\|chr14 (4200322-4200539)
	1-158, gnl\|xenTro1\|scaffold_68 (1541428-1541216)