Non-Coding RNA Search

rcje38_j20.y1

Sequence:


               
               GGAGACAGAGGTGGGGACAGGTATGTAGTTAGAATCTTGCCAACTGCTATAAATTAGAGC
TAAAGGGACACACAACAGGGGTTGTGATCCTATCTAGGAAGTTAGCAAAGGCATCAGAGG
AAGCACCCTGTGATGTGCATGCAAAGCAGGAGTGGAAATAGGCTCGGCTAAGCCAGGAGA
TGGAGAGAGCCTTCCAGACAGGGGGCAGCACATGCAAAGGCCCTGAGGCAGGAAGGAACA
TACCTGCCTCGTGCATCTGAGCGCACGTAGAGGGCTGAGCGCAGGCCAAGGGAGAGAGTG
GGATGAGGGCAAGTGAAGAGCTAGACAGGACCAGACCCAGGAGGGGACACTCAGAGTGGA
CAGTCAGGCACCCCAAAGGTCATTAGGCAATAGAACCACATGAAAAATGTTGCATTTGTA
AGATCACTCTGAAATTTATGAGGATCATGTAATCCTTAAGCCAGAACAGGATGCTATGAA
AAAGAAACAATTAGAGAACCAGAAAGAACTCTTGGAAATGTAAAATATGCTGCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACAGAGGTGGGGACAGGTATGTAGTTAGAATCTTGCCAACTGCTATAAATTAGAGC
TAAAGGGACACACAACAGGGGTTGTGATCCTATCTAGGAAGTTAGCAAAGGCATCAGAGG
AAGCACCCTGTGATGTGCATGCAAAGCAGGAGTGGAAATAGGCTCGGCTAAGCCAGGAGA
TGGAGAGAGCCTTCCAGACAGGGGGCAGCACATGCAAAGGCCCTGAGGCAGGAAGGAACA
TACCTGCCTCGTGCATCTGAGCGCACGTAGAGGGCTGAGCGCAGGCCAAGGGAGAGAGTG
GGATGAGGGCAAGTGAAGAGCTAGACAGGACCAGACCCAGGAGGGGACACTCAGAGTGGA
CAGTCAGGCACCCCAAAGGTCATTAGGCAATAGAACCACATGAAAAATGTTGCATTTGTA
AGATCACTCTGAAATTTATGAGGATCATGTAATCCTTAAGCCAGAACAGGATGCTATGAA
AAAGAAACAATTAGAGAACCAGAAAGAACTCTTGGAAATGTAAAATATGCTGCTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-337, + strand, RNAz p=0.623837

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-337, + strand, RNAz p=0.623837

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               144-537, gnl|bosTau2|chr29 (43667030-43667410)
               

               
               144-537, gnl|Hg17|chr11 (2800363-2800730)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-537, gnl|bosTau2|chr29 (43667030-43667410)
               

               
               144-537, gnl|Hg17|chr11 (2800363-2800730)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cje (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)

	144-537, gnl\|bosTau2\|chr29 (43667030-43667410)
	144-537, gnl\|Hg17\|chr11 (2800363-2800730)