Non-Coding RNA Search

rcki012_a11.y1

Sequence:


               
               TCATGATCGTTTGGGGAGGGTTTTTCTGTATTTCTGTGTTTCTTTTTTTCTTGCGGGTTT
ATTTGTTCCAAGGAAGAACCGTATTTTCTGTTTCCAGTGTTCTGTTCAGGAACTCCCTGC
CCTGCCCCTGCATTGCCTGTCACCTGAGAGCTGGCAGAACAAAGCAGGCAGTAGAGCTGT
TTGTTTCAGGCCCGTCTTTGGGGGATGATGAAAACTGTGAATCTTTGGCAGAGTTAGAGC
TCAGGACGGCTTGATATTTTCCAAATGGGTTAGCGTAACCCAGGGACCTTGCTTGAAGTC
TGGTAATGACAGCTCAGCCACCAAATTTTCCTTAGTGTATAGCTTTTGAGAGGAAAAAAG
CCTTTTAAAATTAAGAGCTTTGATAGATATCATTACTAGTTTAATCTCTATTCTTAAAGG
AAATACTTAATCAGATATTGACCGTGTTAGGCCATCTGCCTGTATCTGAGTATTTTCCTC
TAAGCCAAGGAGAACCTTCTCTTTCCTCAGATTAATGTTCTATGACAAATGCTGTTTGGG
GTGCAAGAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATGATCGTTTGGGGAGGGTTTTTCTGTATTTCTGTGTTTCTTTTTTTCTTGCGGGTTT
ATTTGTTCCAAGGAAGAACCGTATTTTCTGTTTCCAGTGTTCTGTTCAGGAACTCCCTGC
CCTGCCCCTGCATTGCCTGTCACCTGAGAGCTGGCAGAACAAAGCAGGCAGTAGAGCTGT
TTGTTTCAGGCCCGTCTTTGGGGGATGATGAAAACTGTGAATCTTTGGCAGAGTTAGAGC
TCAGGACGGCTTGATATTTTCCAAATGGGTTAGCGTAACCCAGGGACCTTGCTTGAAGTC
TGGTAATGACAGCTCAGCCACCAAATTTTCCTTAGTGTATAGCTTTTGAGAGGAAAAAAG
CCTTTTAAAATTAAGAGCTTTGATAGATATCATTACTAGTTTAATCTCTATTCTTAAAGG
AAATACTTAATCAGATATTGACCGTGTTAGGCCATCTGCCTGTATCTGAGTATTTTCCTC
TAAGCCAAGGAGAACCTTCTCTTTCCTCAGATTAATGTTCTATGACAAATGCTGTTTGGG
GTGCAAGAGAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               129-269, - strand, RNAz p=0.89753
               

               
               367-468, - strand, RNAz p=0.568181

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               129-269, - strand, RNAz p=0.89753
               

               
               367-468, - strand, RNAz p=0.568181

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-550, gnl|bosTau2|chr28 (11216570-11217116)
               

               
               1-550, gnl|canFam2|chr4 (15214427-15214957)
               

               
               1-550, gnl|echTel1|scaffold_309232 (88739-88199)
               

               
               1-550, gnl|hg17|chr10 (61264991-61265549)
               

               
               1-550, gnl|Hg17|chr10 (61265886-61265028)
               

               
               1-550, gnl|loxAfr1|scaffold_7807 (20978-21550)
               

               
               1-550, gnl|mm7|chr10 (69754906-69754426)
               

               
               1-550, gnl|Mm7|chr10 (69754385-69754867)
               

               
               1-550, gnl|oryCun1|scaffold_177544 (42158-41620)
               

               
               1-550, gnl|panTro1|chr8 (62077524-62078082)
               

               
               1-550, gnl|rheMac2|chr9 (77453977-77453426)
               

               
               1-550, gnl|rn3|chr20 (19211809-19212300)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-550, gnl|bosTau2|chr28 (11216570-11217116)
               

               
               1-550, gnl|canFam2|chr4 (15214427-15214957)
               

               
               1-550, gnl|echTel1|scaffold_309232 (88739-88199)
               

               
               1-550, gnl|hg17|chr10 (61264991-61265549)
               

               
               1-550, gnl|Hg17|chr10 (61265886-61265028)
               

               
               1-550, gnl|loxAfr1|scaffold_7807 (20978-21550)
               

               
               1-550, gnl|mm7|chr10 (69754906-69754426)
               

               
               1-550, gnl|Mm7|chr10 (69754385-69754867)
               

               
               1-550, gnl|oryCun1|scaffold_177544 (42158-41620)
               

               
               1-550, gnl|panTro1|chr8 (62077524-62078082)
               

               
               1-550, gnl|rheMac2|chr9 (77453977-77453426)
               

               
               1-550, gnl|rn3|chr20 (19211809-19212300)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	129-269, - strand, RNAz p=0.89753
	367-468, - strand, RNAz p=0.568181

	1-550, gnl\|bosTau2\|chr28 (11216570-11217116)
	1-550, gnl\|canFam2\|chr4 (15214427-15214957)
	1-550, gnl\|echTel1\|scaffold_309232 (88739-88199)
	1-550, gnl\|hg17\|chr10 (61264991-61265549)
	1-550, gnl\|Hg17\|chr10 (61265886-61265028)
	1-550, gnl\|loxAfr1\|scaffold_7807 (20978-21550)
	1-550, gnl\|mm7\|chr10 (69754906-69754426)
	1-550, gnl\|Mm7\|chr10 (69754385-69754867)
	1-550, gnl\|oryCun1\|scaffold_177544 (42158-41620)
	1-550, gnl\|panTro1\|chr8 (62077524-62078082)
	1-550, gnl\|rheMac2\|chr9 (77453977-77453426)
	1-550, gnl\|rn3\|chr20 (19211809-19212300)