Non-Coding RNA Search

rcki014_c18.y1

Sequence:


               
               CAACCAGCGGATGAACTGGGCCTGCTGAACCTTGGTGAAGGGGATCCTGCTGGTGGAGGT
GCAGGTGTGAGTGGATGTGGGAGTGCTGGTGGTGGTGCGGGGTCACGTTGAACATCTGCA
GCCGGGCCAAGGGGTCGCTGGTCAGGGATGCCATGCGCTCGGCATGGATGCGCTCGGCCG
CCAGTCTGTCCGGGTAGCTCATTTCTGGCCGGAGCTGGGGGCCCGCCAGGGCCAGTCTCT
CCCGCTCCAAGGGATTCAGGCCGGGGTGGAAGGACGCAAAAGGGTGGGGGCCAGCGGCAG
GGGGGATGGTGAGGGCGCTGTGCCGGGCGAAATGCTCCATGGGGTTGGCGGCTGGGTGCA
GGGGATCCAGCTCCGGGGGCTTCACCTCAAAGCCCGGCTTCATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACCAGCGGATGAACTGGGCCTGCTGAACCTTGGTGAAGGGGATCCTGCTGGTGGAGGT
GCAGGTGTGAGTGGATGTGGGAGTGCTGGTGGTGGTGCGGGGTCACGTTGAACATCTGCA
GCCGGGCCAAGGGGTCGCTGGTCAGGGATGCCATGCGCTCGGCATGGATGCGCTCGGCCG
CCAGTCTGTCCGGGTAGCTCATTTCTGGCCGGAGCTGGGGGCCCGCCAGGGCCAGTCTCT
CCCGCTCCAAGGGATTCAGGCCGGGGTGGAAGGACGCAAAAGGGTGGGGGCCAGCGGCAG
GGGGGATGGTGAGGGCGCTGTGCCGGGCGAAATGCTCCATGGGGTTGGCGGCTGGGTGCA
GGGGATCCAGCTCCGGGGGCTTCACCTCAAAGCCCGGCTTCATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47197443|emb|CAF88574.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47197443|emb|CAF88574.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               29-147, + strand, RNAz p=0.592859

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               29-147, + strand, RNAz p=0.592859

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               29-405, gnl|bosTau2|chr16 (30481924-30482300)
               

               
               29-405, gnl|Hg17|chr1 (8352520-8352896)
               

               
               29-405, gnl|Mm7|chr4 (149607023-149606647)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-405, gnl|bosTau2|chr16 (30481924-30482300)
               

               
               29-405, gnl|Hg17|chr1 (8352520-8352896)
               

               
               29-405, gnl|Mm7|chr4 (149607023-149606647)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	29-405, gnl\|bosTau2\|chr16 (30481924-30482300)
	29-405, gnl\|Hg17\|chr1 (8352520-8352896)
	29-405, gnl\|Mm7\|chr4 (149607023-149606647)