Non-Coding RNA Search

rcki014_e6.y1

Sequence:


               
               GGTTGCCTTACTGTTTATCGCCTTTGCAAATACAATGCAGCAGCGTGTTTTTGGCTTCTT
GCCAGGAAAGAGGAGCCAATTTGATCGTGTTGCTTCTGGATGTCAAAACATTCTCGTCTG
ACCATGCCACAGAAGAAGTTTGTTGAAAGTGTGACTGGCTGACATGATGACTGATTGGCT
GATAACGGCGGCTGACAGTGATTGATTGAGTGTAAAATTATCTGCTCTCATTGCTTCTGA
AATTGAATTCAGATTGGTTCTATTGGAAGGTTTCCATGGAGACCATAACCTGCTGTAGCA
GGTGTTTGTGGATGCAGTGGCTTATTGTGATCAATACCTGTTTCCTGTGCTGGTCTGAAG
AAATTATTACTGATTGTAGGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTGCCTTACTGTTTATCGCCTTTGCAAATACAATGCAGCAGCGTGTTTTTGGCTTCTT
GCCAGGAAAGAGGAGCCAATTTGATCGTGTTGCTTCTGGATGTCAAAACATTCTCGTCTG
ACCATGCCACAGAAGAAGTTTGTTGAAAGTGTGACTGGCTGACATGATGACTGATTGGCT
GATAACGGCGGCTGACAGTGATTGATTGAGTGTAAAATTATCTGCTCTCATTGCTTCTGA
AATTGAATTCAGATTGGTTCTATTGGAAGGTTTCCATGGAGACCATAACCTGCTGTAGCA
GGTGTTTGTGGATGCAGTGGCTTATTGTGATCAATACCTGTTTCCTGTGCTGGTCTGAAG
AAATTATTACTGATTGTAGGCAGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-182, - strand, RNAz p=0.827474
               

               
               198-382, - strand, RNAz p=0.987261

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-182, - strand, RNAz p=0.827474
               

               
               198-382, - strand, RNAz p=0.987261

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-382, gnl|bosTau2|chr10 (36081090-36080708)
               

               
               1-382, gnl|canFam2|chr30 (28829225-28829604)
               

               
               1-382, gnl|dasNov1|scaffold_15 (126233-125853)
               

               
               1-382, gnl|echTel1|scaffold_322799 (106618-106992)
               

               
               1-382, gnl|hg17|chr15 (59117794-59118177)
               

               
               1-382, gnl|Hg17|chr15 (59118183-59117805)
               

               
               1-382, gnl|loxAfr1|scaffold_3853 (68239-67858)
               

               
               1-382, gnl|mm7|chr9 (68877993-68877609)
               

               
               1-382, gnl|Mm7|chr9 (68877597-68877980)
               

               
               1-382, gnl|monDom2|scaffold_12 (53438709-53438325)
               

               
               1-382, gnl|oryCun1|scaffold_209524 (547031-547400)
               

               
               1-382, gnl|panTro1|chr16 (59542835-59543218)
               

               
               1-382, gnl|rheMac2|chr7 (39458949-39459332)
               

               
               1-382, gnl|rn3|chr8 (73288960-73288577)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr10 (36081090-36080708)
               

               
               1-382, gnl|canFam2|chr30 (28829225-28829604)
               

               
               1-382, gnl|dasNov1|scaffold_15 (126233-125853)
               

               
               1-382, gnl|echTel1|scaffold_322799 (106618-106992)
               

               
               1-382, gnl|hg17|chr15 (59117794-59118177)
               

               
               1-382, gnl|Hg17|chr15 (59118183-59117805)
               

               
               1-382, gnl|loxAfr1|scaffold_3853 (68239-67858)
               

               
               1-382, gnl|mm7|chr9 (68877993-68877609)
               

               
               1-382, gnl|Mm7|chr9 (68877597-68877980)
               

               
               1-382, gnl|monDom2|scaffold_12 (53438709-53438325)
               

               
               1-382, gnl|oryCun1|scaffold_209524 (547031-547400)
               

               
               1-382, gnl|panTro1|chr16 (59542835-59543218)
               

               
               1-382, gnl|rheMac2|chr7 (39458949-39459332)
               

               
               1-382, gnl|rn3|chr8 (73288960-73288577)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-182, - strand, RNAz p=0.827474
	198-382, - strand, RNAz p=0.987261

	1-382, gnl\|bosTau2\|chr10 (36081090-36080708)
	1-382, gnl\|canFam2\|chr30 (28829225-28829604)
	1-382, gnl\|dasNov1\|scaffold_15 (126233-125853)
	1-382, gnl\|echTel1\|scaffold_322799 (106618-106992)
	1-382, gnl\|hg17\|chr15 (59117794-59118177)
	1-382, gnl\|Hg17\|chr15 (59118183-59117805)
	1-382, gnl\|loxAfr1\|scaffold_3853 (68239-67858)
	1-382, gnl\|mm7\|chr9 (68877993-68877609)
	1-382, gnl\|Mm7\|chr9 (68877597-68877980)
	1-382, gnl\|monDom2\|scaffold_12 (53438709-53438325)
	1-382, gnl\|oryCun1\|scaffold_209524 (547031-547400)
	1-382, gnl\|panTro1\|chr16 (59542835-59543218)
	1-382, gnl\|rheMac2\|chr7 (39458949-39459332)
	1-382, gnl\|rn3\|chr8 (73288960-73288577)