Non-Coding RNA Search

rcki016_k6.y1

Sequence:


               
               GCACACAGCTCTTCCAGCAGCTTTTATTTGTCCGCCAGCGCACCTCTGGAGGTGAGACGG
GAAGGCTTCAAGCCAGACTGCAAGGAGGGACATTTTCATGTTCTTTCTTCACCACCCACC
CACTCTCTCTTTCAAGGCACATTTGTAAGAGCGTGGTGGAAGCAAGTCGCACTTGGTCTT
CAGTTCTTAGTGGCTCAGGAAGGCGTCTTCAGGAAAACAGTTGGACAGATTCAATATCTT
GTAATAACCTGTAATGGGAAATATATCATCTGAAAAAATATATGTATACGAATTTTTTAA
AAAGAggagttcccactgtggcacagcaggttaaggacccagcattgtctctgtggcagt
acaggttccatccctggccCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACAGCTCTTCCAGCAGCTTTTATTTGTCCGCCAGCGCACCTCTGGAGGTGAGACGG
GAAGGCTTCAAGCCAGACTGCAAGGAGGGACATTTTCATGTTCTTTCTTCACCACCCACC
CACTCTCTCTTTCAAGGCACATTTGTAAGAGCGTGGTGGAAGCAAGTCGCACTTGGTCTT
CAGTTCTTAGTGGCTCAGGAAGGCGTCTTCAGGAAAACAGTTGGACAGATTCAATATCTT
GTAATAACCTGTAATGGGAAATATATCATCTGAAAAAATATATGTATACGAATTTTTTAA
AAAGAggagttcccactgtggcacagcaggttaaggacccagcattgtctctgtggcagt
acaggttccatccctggccCT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-288, gnl|bosTau2|chr19 (14757617-14757904)
               

               
               1-288, gnl|canFam2|chr5 (34738429-34738172)
               

               
               1-288, gnl|echTel1|scaffold_298652 (52856-53101)
               

               
               1-288, gnl|hg17|chr17 (4692412-4692661)
               

               
               1-288, gnl|loxAfr1|scaffold_9798 (21495-21743)
               

               
               1-288, gnl|mm7|chr11 (70654693-70654911)
               

               
               1-288, gnl|oryCun1|scaffold_192382 (18040-18299)
               

               
               1-288, gnl|panTro1|chr19 (5007728-5007978)
               

               
               1-288, gnl|rheMac2|chr16 (4631801-4632050)
               

               
               1-288, gnl|rn3|chr10 (57466961-57467187)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-288, gnl|bosTau2|chr19 (14757617-14757904)
               

               
               1-288, gnl|canFam2|chr5 (34738429-34738172)
               

               
               1-288, gnl|echTel1|scaffold_298652 (52856-53101)
               

               
               1-288, gnl|hg17|chr17 (4692412-4692661)
               

               
               1-288, gnl|loxAfr1|scaffold_9798 (21495-21743)
               

               
               1-288, gnl|mm7|chr11 (70654693-70654911)
               

               
               1-288, gnl|oryCun1|scaffold_192382 (18040-18299)
               

               
               1-288, gnl|panTro1|chr19 (5007728-5007978)
               

               
               1-288, gnl|rheMac2|chr16 (4631801-4632050)
               

               
               1-288, gnl|rn3|chr10 (57466961-57467187)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-288, gnl\|bosTau2\|chr19 (14757617-14757904)
	1-288, gnl\|canFam2\|chr5 (34738429-34738172)
	1-288, gnl\|echTel1\|scaffold_298652 (52856-53101)
	1-288, gnl\|hg17\|chr17 (4692412-4692661)
	1-288, gnl\|loxAfr1\|scaffold_9798 (21495-21743)
	1-288, gnl\|mm7\|chr11 (70654693-70654911)
	1-288, gnl\|oryCun1\|scaffold_192382 (18040-18299)
	1-288, gnl\|panTro1\|chr19 (5007728-5007978)
	1-288, gnl\|rheMac2\|chr16 (4631801-4632050)
	1-288, gnl\|rn3\|chr10 (57466961-57467187)