Non-Coding RNA Search

rcki01_l2.y1

Sequence:


               
               AAACAGCACAATTTTCAGGAGTCCACAATCCCAGCGTGGCTTGGGGATGGGAAATTGTCA
CGTTGTGAATTGCTGAATTGTCACCCCCGGTCGTAGCGCCAGAGAGCTGACTGTCAGATC
CTATTTGCTTTGCTAAATAAGGATATCTCACCAAATTAGCCTCTAATGATACTTCCACAA
ATAGGGTGTTTTACGTGAATTAACGAGGCCGGAGCACCAAATGTCGGGCCAAGCGACTGA
GCTAGGATCGCAGCGATGAAGCCGTATGTTCAAATTAGCGAATTTTTAAGTGTGGAAAAT
CAGAAGTGAGTGCTGCATGCGAACCAGGGCCGCTTTCACTCGAGCACTTGCAACAGTACA
GTCCCTGCTTCTATGCAGCCTCTGAAAGGGCGCGTGTCATTTTGAATACACGGAGCAAAC
TGCCCCCACCCCACCCTCTCTGAGTCTGGAAACAGGCGCAGTAGTATGGTGAAGAGATTA
TAAATCAGTACTTTGCAGTGAGAAGAGGTCATTAATTCCGCAAAGAGTCACAGCTTCTTT
TCATATTCTGACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACAGCACAATTTTCAGGAGTCCACAATCCCAGCGTGGCTTGGGGATGGGAAATTGTCA
CGTTGTGAATTGCTGAATTGTCACCCCCGGTCGTAGCGCCAGAGAGCTGACTGTCAGATC
CTATTTGCTTTGCTAAATAAGGATATCTCACCAAATTAGCCTCTAATGATACTTCCACAA
ATAGGGTGTTTTACGTGAATTAACGAGGCCGGAGCACCAAATGTCGGGCCAAGCGACTGA
GCTAGGATCGCAGCGATGAAGCCGTATGTTCAAATTAGCGAATTTTTAAGTGTGGAAAAT
CAGAAGTGAGTGCTGCATGCGAACCAGGGCCGCTTTCACTCGAGCACTTGCAACAGTACA
GTCCCTGCTTCTATGCAGCCTCTGAAAGGGCGCGTGTCATTTTGAATACACGGAGCAAAC
TGCCCCCACCCCACCCTCTCTGAGTCTGGAAACAGGCGCAGTAGTATGGTGAAGAGATTA
TAAATCAGTACTTTGCAGTGAGAAGAGGTCATTAATTCCGCAAAGAGTCACAGCTTCTTT
TCATATTCTGACCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-391, + strand, RNAz p=0.528336

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-391, + strand, RNAz p=0.528336

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               311-394, + strand, RNAmicro p=0.990839
               

               
               293-412, - strand, RNAmicro p=0.988072

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               311-394, + strand, RNAmicro p=0.990839
               

               
               293-412, - strand, RNAmicro p=0.988072

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-555, gnl|bosTau2|chr25 (14913470-14912902)
               

               
               1-555, gnl|Hg17|chr16 (14306613-14307160)
               

               
               1-555, gnl|Mm7|chr16 (12997276-12997827)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-555, gnl|bosTau2|chr25 (14913470-14912902)
               

               
               1-555, gnl|Hg17|chr16 (14306613-14307160)
               

               
               1-555, gnl|Mm7|chr16 (12997276-12997827)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	311-394, + strand, RNAmicro p=0.990839
	293-412, - strand, RNAmicro p=0.988072

	1-555, gnl\|bosTau2\|chr25 (14913470-14912902)
	1-555, gnl\|Hg17\|chr16 (14306613-14307160)
	1-555, gnl\|Mm7\|chr16 (12997276-12997827)