Non-Coding RNA Search

rcki03_i8.y1

Sequence:


               
               AAGAATAAGCTACTGGGCTACCTACTGTTGCTAGGTGGGAAGCTGGAAAATACCAGGTGT
AAGTGGCTGCCTTCTGTTGGTTGAGGGCTGCAAGATGTGAGGATTCTGTGTTGTTATCTG
gtcctgggttcccaaatcagcttgccttcctcttagcacccttcagagttctcctttgct
tgtctcttgttccatttctaggatttataagttgttcttagtggagaggagcagagaaaa
aaggtctatgccatcttgttcagactagaggtcCCTCACCTACTGAATTTTATGTCTTCA
CTATCCACTAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAATAAGCTACTGGGCTACCTACTGTTGCTAGGTGGGAAGCTGGAAAATACCAGGTGT
AAGTGGCTGCCTTCTGTTGGTTGAGGGCTGCAAGATGTGAGGATTCTGTGTTGTTATCTG
gtcctgggttcccaaatcagcttgccttcctcttagcacccttcagagttctcctttgct
tgtctcttgttccatttctaggatttataagttgttcttagtggagaggagcagagaaaa
aaggtctatgccatcttgttcagactagaggtcCCTCACCTACTGAATTTTATGTCTTCA
CTATCCACTAAATT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-110, - strand, RNAz p=0.618593
               

               
               169-268, + strand, RNAz p=0.697193

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-110, - strand, RNAz p=0.618593
               

               
               169-268, + strand, RNAz p=0.697193

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-289, gnl|bosTau2|chr1 (39879569-39879279)
               

               
               1-289, gnl|canFam2|chr33 (28247657-28248483)
               

               
               1-289, gnl|dasNov1|scaffold_180416 (4675-3952)
               

               
               1-289, gnl|hg17|chr3 (123187385-123188221)
               

               
               1-289, gnl|Hg17|chr3 (123188050-123188317)
               

               
               1-289, gnl|panTro1|chr2_random (6819386-6818576)
               

               
               1-289, gnl|rheMac2|chr2 (41992712-41993516)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-289, gnl|bosTau2|chr1 (39879569-39879279)
               

               
               1-289, gnl|canFam2|chr33 (28247657-28248483)
               

               
               1-289, gnl|dasNov1|scaffold_180416 (4675-3952)
               

               
               1-289, gnl|hg17|chr3 (123187385-123188221)
               

               
               1-289, gnl|Hg17|chr3 (123188050-123188317)
               

               
               1-289, gnl|panTro1|chr2_random (6819386-6818576)
               

               
               1-289, gnl|rheMac2|chr2 (41992712-41993516)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-110, - strand, RNAz p=0.618593
	169-268, + strand, RNAz p=0.697193

	1-289, gnl\|bosTau2\|chr1 (39879569-39879279)
	1-289, gnl\|canFam2\|chr33 (28247657-28248483)
	1-289, gnl\|dasNov1\|scaffold_180416 (4675-3952)
	1-289, gnl\|hg17\|chr3 (123187385-123188221)
	1-289, gnl\|Hg17\|chr3 (123188050-123188317)
	1-289, gnl\|panTro1\|chr2_random (6819386-6818576)
	1-289, gnl\|rheMac2\|chr2 (41992712-41993516)