Non-Coding RNA Search

rcki03_p3.y1

Sequence:


               
               CAGTTCTGCCCGTCGTGCCGGCAGCTCTGAAATTTGAAAATACAGATATCACCTTCGGGG
AAGGGGGGAGGCCATTGAGCCAATTGGAGAAATAAATCCTGCCAGCAGCAGCTACAATGA
CGGCTCTGTTTTTGCGAGCGCATAAGGGACAGTGTCCCTGCCGCTCTTAAATGACAGGCG
TCTATTAAAGATAGCTTTTGTGTAGTGTTTCTCCGAGGCGAGGTCAAATTCCATACACTT
TTATAACCGGGGTCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTCTGCCCGTCGTGCCGGCAGCTCTGAAATTTGAAAATACAGATATCACCTTCGGGG
AAGGGGGGAGGCCATTGAGCCAATTGGAGAAATAAATCCTGCCAGCAGCAGCTACAATGA
CGGCTCTGTTTTTGCGAGCGCATAAGGGACAGTGTCCCTGCCGCTCTTAAATGACAGGCG
TCTATTAAAGATAGCTTTTGTGTAGTGTTTCTCCGAGGCGAGGTCAAATTCCATACACTT
TTATAACCGGGGTCGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-173, - strand, RNAz p=0.548391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-173, - strand, RNAz p=0.548391

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               3-256, gnl|bosTau2|chr4 (37110443-37110186)
               

               
               3-256, gnl|canFam2|chr14 (43273614-43274305)
               

               
               3-256, gnl|dasNov1|scaffold_4770 (63139-63837)
               

               
               3-256, gnl|echTel1|scaffold_290176 (72058-71341)
               

               
               3-256, gnl|hg17|chr7 (26956912-26957608)
               

               
               3-256, gnl|Hg17|chr7 (26957048-26957307)
               

               
               3-256, gnl|loxAfr1|scaffold_4768 (54931-55632)
               

               
               3-256, gnl|mm7|chr6 (52168165-52168854)
               

               
               3-256, gnl|Mm7|chr6 (52168300-52168553)
               

               
               3-256, gnl|monDom2|scaffold_57 (937497-936783)
               

               
               3-256, gnl|panTro1|chr6 (28087000-28087696)
               

               
               3-256, gnl|rheMac2|chr3 (99081884-99081188)
               

               
               3-256, gnl|rn3|chr4 (80782247-80782935)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-256, gnl|bosTau2|chr4 (37110443-37110186)
               

               
               3-256, gnl|canFam2|chr14 (43273614-43274305)
               

               
               3-256, gnl|dasNov1|scaffold_4770 (63139-63837)
               

               
               3-256, gnl|echTel1|scaffold_290176 (72058-71341)
               

               
               3-256, gnl|hg17|chr7 (26956912-26957608)
               

               
               3-256, gnl|Hg17|chr7 (26957048-26957307)
               

               
               3-256, gnl|loxAfr1|scaffold_4768 (54931-55632)
               

               
               3-256, gnl|mm7|chr6 (52168165-52168854)
               

               
               3-256, gnl|Mm7|chr6 (52168300-52168553)
               

               
               3-256, gnl|monDom2|scaffold_57 (937497-936783)
               

               
               3-256, gnl|panTro1|chr6 (28087000-28087696)
               

               
               3-256, gnl|rheMac2|chr3 (99081884-99081188)
               

               
               3-256, gnl|rn3|chr4 (80782247-80782935)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	3-256, gnl\|bosTau2\|chr4 (37110443-37110186)
	3-256, gnl\|canFam2\|chr14 (43273614-43274305)
	3-256, gnl\|dasNov1\|scaffold_4770 (63139-63837)
	3-256, gnl\|echTel1\|scaffold_290176 (72058-71341)
	3-256, gnl\|hg17\|chr7 (26956912-26957608)
	3-256, gnl\|Hg17\|chr7 (26957048-26957307)
	3-256, gnl\|loxAfr1\|scaffold_4768 (54931-55632)
	3-256, gnl\|mm7\|chr6 (52168165-52168854)
	3-256, gnl\|Mm7\|chr6 (52168300-52168553)
	3-256, gnl\|monDom2\|scaffold_57 (937497-936783)
	3-256, gnl\|panTro1\|chr6 (28087000-28087696)
	3-256, gnl\|rheMac2\|chr3 (99081884-99081188)
	3-256, gnl\|rn3\|chr4 (80782247-80782935)