Non-Coding RNA Search

rcki06_m10.y1

Sequence:


               
               GGTCTCTCCTTTCCTTTCAAAACCTGGAGGAAAAGAGGGACGAGGAGAATGGAGGCCTTC
TGGTGTCCGTTCTCCGAAAGGCGGGAAAGGCAAACTACACCTCCCGACTGGCAGCGCGCC
GCTGCGCCTGCGCCCTGATACCTGTCGCCATCTTGCCCCTTCTGAGGCACCGCAAACAAA
CCCAATTCCTGGTGTCCCCTAGTTTTGGCGGAGGAGCCTTTTAGATGAGCCCAGAAAGGC
CGGGCAGGGAAGACAAGCTCTTTGGGGCTACCAAAAAGAAGCAACAATGCCTGTTGTGTG
GCCAACACTTTTGGATCTCAGCAGGGATGAATGCAAAAGGATTCTTCGAAAATTGGAATT
GGAGGCATATGCTGGAGTTATCAGTGCACTTCGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCTCTCCTTTCCTTTCAAAACCTGGAGGAAAAGAGGGACGAGGAGAATGGAGGCCTTC
TGGTGTCCGTTCTCCGAAAGGCGGGAAAGGCAAACTACACCTCCCGACTGGCAGCGCGCC
GCTGCGCCTGCGCCCTGATACCTGTCGCCATCTTGCCCCTTCTGAGGCACCGCAAACAAA
CCCAATTCCTGGTGTCCCCTAGTTTTGGCGGAGGAGCCTTTTAGATGAGCCCAGAAAGGC
CGGGCAGGGAAGACAAGCTCTTTGGGGCTACCAAAAAGAAGCAACAATGCCTGTTGTGTG
GCCAACACTTTTGGATCTCAGCAGGGATGAATGCAAAAGGATTCTTCGAAAATTGGAATT
GGAGGCATATGCTGGAGTTATCAGTGCACTTCGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34857789|ref|XP_346993.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34857789|ref|XP_346993.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-120, + strand, RNAz p=0.918143
               

               
               4-117, - strand, RNAz p=0.533401

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.918143
               

               
               4-117, - strand, RNAz p=0.533401

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-248, gnl|bosTau2|chr9 (7570116-7569871)
               

               
               2-248, gnl|canFam2|chr21 (25241123-25240223)
               

               
               2-248, gnl|dasNov1|scaffold_14982 (1880-942)
               

               
               2-248, gnl|echTel1|scaffold_323213 (71341-72218)
               

               
               2-248, gnl|hg17|chr11 (75833239-75834137)
               

               
               2-248, gnl|Hg17|chr11 (75833575-75833821)
               

               
               2-248, gnl|mm7|chr7 (94688952-94688061)
               

               
               2-248, gnl|Mm7|chr7 (94688619-94688375)
               

               
               2-248, gnl|monDom2|scaffold_46 (14657079-14656220)
               

               
               2-248, gnl|oryCun1|scaffold_189419 (7160-8050)
               

               
               2-248, gnl|panTro1|chr9 (77129910-77130809)
               

               
               2-248, gnl|rheMac2|chr14 (74621705-74622603)
               

               
               2-248, gnl|rn3|chr1 (156011730-156010851)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-248, gnl|bosTau2|chr9 (7570116-7569871)
               

               
               2-248, gnl|canFam2|chr21 (25241123-25240223)
               

               
               2-248, gnl|dasNov1|scaffold_14982 (1880-942)
               

               
               2-248, gnl|echTel1|scaffold_323213 (71341-72218)
               

               
               2-248, gnl|hg17|chr11 (75833239-75834137)
               

               
               2-248, gnl|Hg17|chr11 (75833575-75833821)
               

               
               2-248, gnl|mm7|chr7 (94688952-94688061)
               

               
               2-248, gnl|Mm7|chr7 (94688619-94688375)
               

               
               2-248, gnl|monDom2|scaffold_46 (14657079-14656220)
               

               
               2-248, gnl|oryCun1|scaffold_189419 (7160-8050)
               

               
               2-248, gnl|panTro1|chr9 (77129910-77130809)
               

               
               2-248, gnl|rheMac2|chr14 (74621705-74622603)
               

               
               2-248, gnl|rn3|chr1 (156011730-156010851)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	2-120, + strand, RNAz p=0.918143
	4-117, - strand, RNAz p=0.533401

	2-248, gnl\|bosTau2\|chr9 (7570116-7569871)
	2-248, gnl\|canFam2\|chr21 (25241123-25240223)
	2-248, gnl\|dasNov1\|scaffold_14982 (1880-942)
	2-248, gnl\|echTel1\|scaffold_323213 (71341-72218)
	2-248, gnl\|hg17\|chr11 (75833239-75834137)
	2-248, gnl\|Hg17\|chr11 (75833575-75833821)
	2-248, gnl\|mm7\|chr7 (94688952-94688061)
	2-248, gnl\|Mm7\|chr7 (94688619-94688375)
	2-248, gnl\|monDom2\|scaffold_46 (14657079-14656220)
	2-248, gnl\|oryCun1\|scaffold_189419 (7160-8050)
	2-248, gnl\|panTro1\|chr9 (77129910-77130809)
	2-248, gnl\|rheMac2\|chr14 (74621705-74622603)
	2-248, gnl\|rn3\|chr1 (156011730-156010851)