Non-Coding RNA Search

rcki23_g9.y1

Sequence:


               
               GTGAACTCTGTTGGAAGAGCAGACTTAAGGGGCCTCAGTCAGCCCTGGGCTCAAACTCGA
GCTGAGCCCCTCCAGCTGCGTGACACTGGACCAAACATGTAACCTATCTGGACCTCAATT
TCCTCTTCTGCACTATGAGGGCCATAAGGCTGCCTACTTCTCTCCAGGGCCTAGTTGTGA
GAAATCTGGGAAGAGAGAGTTTGGGATGTATGTGCCTGTAGAGACAACCCAAATTAAGGA
GGCACTTCTGGGAACTGAAGATGATGATTAAGCTCACAGAGGAATGTGGGCCCCAAGAAT
CCTTCTCCGGGAGAACGGGCAGGATATGGGCATGCTCAGCAGTCTTCCCCTCCAGAAGGG
GTGTTCTCTGGTCTTTTGTTTTTCTGGGAGCAGAGAACAAGCACCATGCTAGCAGCGCCA
TCTGCTGGTGAAGAGGAGAACTTTTTACAGCCACACCTACCACCCCTGGAGAGTCTGTCT
CCAAGTGGCTGTGGTCACCTGGTGGCAGTCACACCTGATATGGGAAATGGACACATCAGA
GATGGAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACTCTGTTGGAAGAGCAGACTTAAGGGGCCTCAGTCAGCCCTGGGCTCAAACTCGA
GCTGAGCCCCTCCAGCTGCGTGACACTGGACCAAACATGTAACCTATCTGGACCTCAATT
TCCTCTTCTGCACTATGAGGGCCATAAGGCTGCCTACTTCTCTCCAGGGCCTAGTTGTGA
GAAATCTGGGAAGAGAGAGTTTGGGATGTATGTGCCTGTAGAGACAACCCAAATTAAGGA
GGCACTTCTGGGAACTGAAGATGATGATTAAGCTCACAGAGGAATGTGGGCCCCAAGAAT
CCTTCTCCGGGAGAACGGGCAGGATATGGGCATGCTCAGCAGTCTTCCCCTCCAGAAGGG
GTGTTCTCTGGTCTTTTGTTTTTCTGGGAGCAGAGAACAAGCACCATGCTAGCAGCGCCA
TCTGCTGGTGAAGAGGAGAACTTTTTACAGCCACACCTACCACCCCTGGAGAGTCTGTCT
CCAAGTGGCTGTGGTCACCTGGTGGCAGTCACACCTGATATGGGAAATGGACACATCAGA
GATGGAGACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               357-472, + strand, RNAz p=0.961401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-472, + strand, RNAz p=0.961401

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               41-263, gnl|bosTau2|chr7 (21635377-21635157)
               

               
               41-263, gnl|canFam2|chr4 (39158855-39158446)
               

               
               41-263, gnl|dasNov1|scaffold_31231 (4240-4661)
               

               
               41-263, gnl|echTel1|scaffold_290082 (1271-1679)
               

               
               41-263, gnl|hg17|chr5 (176750242-176750634)
               

               
               41-263, gnl|Hg17|chr5 (176751428-176750431)
               

               
               41-263, gnl|loxAfr1|scaffold_37694 (6716-7123)
               

               
               41-263, gnl|mm7|chr13 (54486395-54486820)
               

               
               41-263, gnl|oryCun1|scaffold_203910 (138187-138522)
               

               
               41-263, gnl|panTro1|chr4 (184224063-184224455)
               

               
               41-263, gnl|rheMac2|chr6 (173918167-173918559)
               

               
               41-263, gnl|rn3|chr17 (15271930-15271513)
               


               
               319-520, gnl|bosTau2|chr7 (21634879-21634678)
               

               
               319-520, gnl|Hg17|chr5 (176750389-176750188)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-263, gnl|bosTau2|chr7 (21635377-21635157)
               

               
               41-263, gnl|canFam2|chr4 (39158855-39158446)
               

               
               41-263, gnl|dasNov1|scaffold_31231 (4240-4661)
               

               
               41-263, gnl|echTel1|scaffold_290082 (1271-1679)
               

               
               41-263, gnl|hg17|chr5 (176750242-176750634)
               

               
               41-263, gnl|Hg17|chr5 (176751428-176750431)
               

               
               41-263, gnl|loxAfr1|scaffold_37694 (6716-7123)
               

               
               41-263, gnl|mm7|chr13 (54486395-54486820)
               

               
               41-263, gnl|oryCun1|scaffold_203910 (138187-138522)
               

               
               41-263, gnl|panTro1|chr4 (184224063-184224455)
               

               
               41-263, gnl|rheMac2|chr6 (173918167-173918559)
               

               
               41-263, gnl|rn3|chr17 (15271930-15271513)
               


               
               319-520, gnl|bosTau2|chr7 (21634879-21634678)
               

               
               319-520, gnl|Hg17|chr5 (176750389-176750188)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	41-263, gnl\|bosTau2\|chr7 (21635377-21635157)
	41-263, gnl\|canFam2\|chr4 (39158855-39158446)
	41-263, gnl\|dasNov1\|scaffold_31231 (4240-4661)
	41-263, gnl\|echTel1\|scaffold_290082 (1271-1679)
	41-263, gnl\|hg17\|chr5 (176750242-176750634)
	41-263, gnl\|Hg17\|chr5 (176751428-176750431)
	41-263, gnl\|loxAfr1\|scaffold_37694 (6716-7123)
	41-263, gnl\|mm7\|chr13 (54486395-54486820)
	41-263, gnl\|oryCun1\|scaffold_203910 (138187-138522)
	41-263, gnl\|panTro1\|chr4 (184224063-184224455)
	41-263, gnl\|rheMac2\|chr6 (173918167-173918559)
	41-263, gnl\|rn3\|chr17 (15271930-15271513)

	319-520, gnl\|bosTau2\|chr7 (21634879-21634678)
	319-520, gnl\|Hg17\|chr5 (176750389-176750188)