Non-Coding RNA Search

rcki23_o15.y1

Sequence:


               
               ACTCCTTGGGTGGGTGGAGGCTCATAAGACACTCTTCTGAGCCGGTACTCTGATGCAGCC
TCAGGTGGATATGACAGAGGCTGATGTGGTCACGATTGGACGAGTGACTTGGAAAAGAAA
GAAAACGTGGTCTTATTTTTGGGTCTGAGGCTGTAACTGAGTTTCAGCTCAGCTGCAGTC
CAGTACTCCAGGACACGCCAAATGCTGTGTATAAAATAAAATAAAATAACCAAACATATC
CACACTTCTTTAGTGTTTTCCTCCTCTGGTGCTTTCTTAAGTAGCAGGTTTTGTTTCAAA
AGTTTTAACATTTGAGAGAAACTCAGTAGGTAGAATTAGTTTTGGGGTGGTTTGTACTGC
CTCAAACTCATGCACACATCTGCCATGTTTCTCTCTCTCAACTCTGGGCATGATTGTTCC
TTGATGAAAGTTCTAGTGCCCAGAAAGGATGAAGAGACAAGGACATAGATGAGGTTTGGG
AACAAATGGAGGAAAAGGGGGAATCCAGGATTTAAAGGGTAGATGGAATTCCCTTGTGGT
GCAGTGGGCTAAGGATCTGGCATTGTCACCCCTGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCTTGGGTGGGTGGAGGCTCATAAGACACTCTTCTGAGCCGGTACTCTGATGCAGCC
TCAGGTGGATATGACAGAGGCTGATGTGGTCACGATTGGACGAGTGACTTGGAAAAGAAA
GAAAACGTGGTCTTATTTTTGGGTCTGAGGCTGTAACTGAGTTTCAGCTCAGCTGCAGTC
CAGTACTCCAGGACACGCCAAATGCTGTGTATAAAATAAAATAAAATAACCAAACATATC
CACACTTCTTTAGTGTTTTCCTCCTCTGGTGCTTTCTTAAGTAGCAGGTTTTGTTTCAAA
AGTTTTAACATTTGAGAGAAACTCAGTAGGTAGAATTAGTTTTGGGGTGGTTTGTACTGC
CTCAAACTCATGCACACATCTGCCATGTTTCTCTCTCTCAACTCTGGGCATGATTGTTCC
TTGATGAAAGTTCTAGTGCCCAGAAAGGATGAAGAGACAAGGACATAGATGAGGTTTGGG
AACAAATGGAGGAAAAGGGGGAATCCAGGATTTAAAGGGTAGATGGAATTCCCTTGTGGT
GCAGTGGGCTAAGGATCTGGCATTGTCACCCCTGTGGC

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-212, gnl|bosTau2|chr5 (22956555-22956769)
               

               
               1-212, gnl|Hg17|chr12 (48865743-48865529)
               

               
               1-212, gnl|Mm7|chr15 (99772853-99772659)
               


               
               225-528, gnl|bosTau2|chr5 (22953230-22953532)
               

               
               225-528, gnl|canFam2|chr27 (7558622-7558391)
               

               
               225-528, gnl|dasNov1|scaffold_4379 (21820-22037)
               

               
               225-528, gnl|echTel1|scaffold_315601 (94650-94864)
               

               
               225-528, gnl|hg17|chr12 (48869264-48869490)
               

               
               225-528, gnl|Hg17|chr12 (48869593-48869302)
               

               
               225-528, gnl|loxAfr1|scaffold_456 (136611-136829)
               

               
               225-528, gnl|mm7|chr15 (99777949-99778163)
               

               
               225-528, gnl|oryCun1|scaffold_211171 (13337-13558)
               

               
               225-528, gnl|panTro1|chr10 (50055035-50055261)
               

               
               225-528, gnl|rheMac2|chr11 (47318149-47318374)
               

               
               225-528, gnl|rn3|chr7 (138608021-138608231)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chr5 (22956555-22956769)
               

               
               1-212, gnl|Hg17|chr12 (48865743-48865529)
               

               
               1-212, gnl|Mm7|chr15 (99772853-99772659)
               


               
               225-528, gnl|bosTau2|chr5 (22953230-22953532)
               

               
               225-528, gnl|canFam2|chr27 (7558622-7558391)
               

               
               225-528, gnl|dasNov1|scaffold_4379 (21820-22037)
               

               
               225-528, gnl|echTel1|scaffold_315601 (94650-94864)
               

               
               225-528, gnl|hg17|chr12 (48869264-48869490)
               

               
               225-528, gnl|Hg17|chr12 (48869593-48869302)
               

               
               225-528, gnl|loxAfr1|scaffold_456 (136611-136829)
               

               
               225-528, gnl|mm7|chr15 (99777949-99778163)
               

               
               225-528, gnl|oryCun1|scaffold_211171 (13337-13558)
               

               
               225-528, gnl|panTro1|chr10 (50055035-50055261)
               

               
               225-528, gnl|rheMac2|chr11 (47318149-47318374)
               

               
               225-528, gnl|rn3|chr7 (138608021-138608231)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-212, gnl\|bosTau2\|chr5 (22956555-22956769)
	1-212, gnl\|Hg17\|chr12 (48865743-48865529)
	1-212, gnl\|Mm7\|chr15 (99772853-99772659)

	225-528, gnl\|bosTau2\|chr5 (22953230-22953532)
	225-528, gnl\|canFam2\|chr27 (7558622-7558391)
	225-528, gnl\|dasNov1\|scaffold_4379 (21820-22037)
	225-528, gnl\|echTel1\|scaffold_315601 (94650-94864)
	225-528, gnl\|hg17\|chr12 (48869264-48869490)
	225-528, gnl\|Hg17\|chr12 (48869593-48869302)
	225-528, gnl\|loxAfr1\|scaffold_456 (136611-136829)
	225-528, gnl\|mm7\|chr15 (99777949-99778163)
	225-528, gnl\|oryCun1\|scaffold_211171 (13337-13558)
	225-528, gnl\|panTro1\|chr10 (50055035-50055261)
	225-528, gnl\|rheMac2\|chr11 (47318149-47318374)
	225-528, gnl\|rn3\|chr7 (138608021-138608231)