Non-Coding RNA Search

rcki24_k16.y1

Sequence:


               
               GGAAAAGGAAGGATGGATCATGGACCTTTGTATCGAGCGGGGCTGGGTGGGGACAGGGTC
CTGTTCCCTGCCTGGGGCAGCCCAGAATGGGGCCCTGTCTGAGGGTGCCCCAGCGAGGGG
GAGGGTACAGCTCTGTCCTCCAGGAGCCTCGTGACGAGGGGCAAAGTCCTGTCTTGGGGG
AACCTTGTCTGAGACGAAGGGGCCTCTTCCATGCAGTATCTTTCTGCACGTCCGAGACTC
AGTCCTGAGGCCAGGAAGTAGACCGAGCCTCCCTGGCTTTGGGGCAGCAGCCTTGCCCCA
GGAAGTGTGTGGTTTGATTCAAAGCTGTGATGGAAGGGGCTTGGGGATGCCTGACTCACC
TGGGATGGAAAGGGGTCGGAGGTGGGGCGATGGGGGCGCCTTCCCAGCAGAGGTGACAGT
TAAAAGCTTAGGGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGGAAGGATGGATCATGGACCTTTGTATCGAGCGGGGCTGGGTGGGGACAGGGTC
CTGTTCCCTGCCTGGGGCAGCCCAGAATGGGGCCCTGTCTGAGGGTGCCCCAGCGAGGGG
GAGGGTACAGCTCTGTCCTCCAGGAGCCTCGTGACGAGGGGCAAAGTCCTGTCTTGGGGG
AACCTTGTCTGAGACGAAGGGGCCTCTTCCATGCAGTATCTTTCTGCACGTCCGAGACTC
AGTCCTGAGGCCAGGAAGTAGACCGAGCCTCCCTGGCTTTGGGGCAGCAGCCTTGCCCCA
GGAAGTGTGTGGTTTGATTCAAAGCTGTGATGGAAGGGGCTTGGGGATGCCTGACTCACC
TGGGATGGAAAGGGGTCGGAGGTGGGGCGATGGGGGCGCCTTCCCAGCAGAGGTGACAGT
TAAAAGCTTAGGGGGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               128-230, + strand, RNAz p=0.817903

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-230, + strand, RNAz p=0.817903

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               128-437, gnl|bosTau2|chr25 (28525250-28525560)
               

               
               128-437, gnl|canFam2|chr6 (8966850-8965831)
               

               
               128-437, gnl|hg17|chr7 (73365085-73366167)
               

               
               128-437, gnl|Hg17|chr7 (73365846-73366166)
               

               
               128-437, gnl|panTro1|chr6 (75109164-75110245)
               

               
               128-437, gnl|rheMac2|chr3 (51949622-51950700)
               

               
               128-437, gnl|rn3|chr12 (23221567-23222492)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-437, gnl|bosTau2|chr25 (28525250-28525560)
               

               
               128-437, gnl|canFam2|chr6 (8966850-8965831)
               

               
               128-437, gnl|hg17|chr7 (73365085-73366167)
               

               
               128-437, gnl|Hg17|chr7 (73365846-73366166)
               

               
               128-437, gnl|panTro1|chr6 (75109164-75110245)
               

               
               128-437, gnl|rheMac2|chr3 (51949622-51950700)
               

               
               128-437, gnl|rn3|chr12 (23221567-23222492)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	128-437, gnl\|bosTau2\|chr25 (28525250-28525560)
	128-437, gnl\|canFam2\|chr6 (8966850-8965831)
	128-437, gnl\|hg17\|chr7 (73365085-73366167)
	128-437, gnl\|Hg17\|chr7 (73365846-73366166)
	128-437, gnl\|panTro1\|chr6 (75109164-75110245)
	128-437, gnl\|rheMac2\|chr3 (51949622-51950700)
	128-437, gnl\|rn3\|chr12 (23221567-23222492)