Non-Coding RNA Search

rcki28_c13.y1

Sequence:


               
               TACTTGTACTTGTCCACTTTCCTGTCTTGTCAGCCAGCTGCCTTTTCTGTAGCGTGTTTT
TTTAAGTACCCAGTGAATTTTGGAATCCTGGATGCATAGCCAGTTTTTCTCTAACAAGCC
TTCCCGTCCGGTCTCTGCAGGCTCGTGCCCTGATGCTGTAGTCTTGCTCTGAGCCCTGAG
ACCCTCCCTGTTTTGTTTCCCCCATAACCAGTTTTACCAGGGACCCCTCTGCCGGATGGC
TTGTCGCTGTCCCAAACAGGGTCTGCACACGTTCACTGCAGGGAAGAGACGGATCGTTAG
CCTCAGGCTAAGGAGGTACAAGTTCACCCCAAACAGAATGTGGTTTTTTGGTTTTTTTGG
TTTTTTTATCATCGCACCATTCCTTGTTTCTTCCCTTCAAGATTATTTGGTTCCTGTTTC
CCTGGAGAGAAATAAAAGGAAGTTATAAATGACCGAGAAGGATCAGCAGCAGCCTTGAGC
CAGATAAGTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTTGTACTTGTCCACTTTCCTGTCTTGTCAGCCAGCTGCCTTTTCTGTAGCGTGTTTT
TTTAAGTACCCAGTGAATTTTGGAATCCTGGATGCATAGCCAGTTTTTCTCTAACAAGCC
TTCCCGTCCGGTCTCTGCAGGCTCGTGCCCTGATGCTGTAGTCTTGCTCTGAGCCCTGAG
ACCCTCCCTGTTTTGTTTCCCCCATAACCAGTTTTACCAGGGACCCCTCTGCCGGATGGC
TTGTCGCTGTCCCAAACAGGGTCTGCACACGTTCACTGCAGGGAAGAGACGGATCGTTAG
CCTCAGGCTAAGGAGGTACAAGTTCACCCCAAACAGAATGTGGTTTTTTGGTTTTTTTGG
TTTTTTTATCATCGCACCATTCCTTGTTTCTTCCCTTCAAGATTATTTGGTTCCTGTTTC
CCTGGAGAGAAATAAAAGGAAGTTATAAATGACCGAGAAGGATCAGCAGCAGCCTTGAGC
CAGATAAGTGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               180-270, - strand, RNAz p=0.963148

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-270, - strand, RNAz p=0.963148

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               16-349, gnl|bosTau2|chr8 (10317923-10318269)
               

               
               16-349, gnl|Hg17|chr9 (27320208-27319820)
               

               
               16-349, gnl|Mm7|chr4 (35092332-35091969)
               


               
               361-492, gnl|bosTau2|chr8 (10318264-10318397)
               

               
               361-492, gnl|canFam2|chr11 (48490921-48491219)
               

               
               361-492, gnl|hg17|chr9 (27319570-27319839)
               

               
               361-492, gnl|Hg17|chr9 (27319824-27319698)
               

               
               361-492, gnl|loxAfr1|scaffold_8963 (44981-45242)
               

               
               361-492, gnl|mm7|chr4 (35091739-35091988)
               

               
               361-492, gnl|Mm7|chr4 (35091973-35091856)
               

               
               361-492, gnl|oryCun1|scaffold_198603 (151313-151055)
               

               
               361-492, gnl|panTro1|chr11 (27852783-27853051)
               

               
               361-492, gnl|rheMac2|chr15 (49768350-49768072)
               

               
               361-492, gnl|rn3|chr5 (51616830-51617088)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-349, gnl|bosTau2|chr8 (10317923-10318269)
               

               
               16-349, gnl|Hg17|chr9 (27320208-27319820)
               

               
               16-349, gnl|Mm7|chr4 (35092332-35091969)
               


               
               361-492, gnl|bosTau2|chr8 (10318264-10318397)
               

               
               361-492, gnl|canFam2|chr11 (48490921-48491219)
               

               
               361-492, gnl|hg17|chr9 (27319570-27319839)
               

               
               361-492, gnl|Hg17|chr9 (27319824-27319698)
               

               
               361-492, gnl|loxAfr1|scaffold_8963 (44981-45242)
               

               
               361-492, gnl|mm7|chr4 (35091739-35091988)
               

               
               361-492, gnl|Mm7|chr4 (35091973-35091856)
               

               
               361-492, gnl|oryCun1|scaffold_198603 (151313-151055)
               

               
               361-492, gnl|panTro1|chr11 (27852783-27853051)
               

               
               361-492, gnl|rheMac2|chr15 (49768350-49768072)
               

               
               361-492, gnl|rn3|chr5 (51616830-51617088)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	16-349, gnl\|bosTau2\|chr8 (10317923-10318269)
	16-349, gnl\|Hg17\|chr9 (27320208-27319820)
	16-349, gnl\|Mm7\|chr4 (35092332-35091969)

	361-492, gnl\|bosTau2\|chr8 (10318264-10318397)
	361-492, gnl\|canFam2\|chr11 (48490921-48491219)
	361-492, gnl\|hg17\|chr9 (27319570-27319839)
	361-492, gnl\|Hg17\|chr9 (27319824-27319698)
	361-492, gnl\|loxAfr1\|scaffold_8963 (44981-45242)
	361-492, gnl\|mm7\|chr4 (35091739-35091988)
	361-492, gnl\|Mm7\|chr4 (35091973-35091856)
	361-492, gnl\|oryCun1\|scaffold_198603 (151313-151055)
	361-492, gnl\|panTro1\|chr11 (27852783-27853051)
	361-492, gnl\|rheMac2\|chr15 (49768350-49768072)
	361-492, gnl\|rn3\|chr5 (51616830-51617088)