Non-Coding RNA Search

rcki28_o3.y1

Sequence:


               
               CCCCTAGCCTGGGAATCTCCACATGCCACGGGAGCGGCTCAAGAAAAGGCAAAAAGACAA
AAAAATAAAATTAAATTAAATTTTAAAAAATGAAAAGTGGAACACTAAGCAAGCTATCGA
ACACGGCAGAATGCTCCAGTTTGTGTGGGAAAGGTGGGAATTATGTGCGTAGCTTTAAAA
AAAAAAAAGTCTATATGCAATCTCCAAAGGGTATATCATAAACTGGTAGCAGTGATTACA
TTAAGAGTGAAACCAGGGGACTTGAGTTTAGGAAAAAGAAACAGATTTATTTTGACTTTG
TACTTTTGTAGATTTTTTTGTTTTTTTTTTTTTGGTATTTTATACCAAGGGCATGTATTA
ACTACATCGATAGTTGTGAAATAATGTTTCAGGAAATACAAAATGAAGTAAAAATGGAGA
GAGGAAGCTTTCACTTACACAGGGTGCTTTATGATCAGATAAAACTTGGGTCAACTTCTA
ATCATTCCACTGGCTAAAATTATAACCTCACATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTAGCCTGGGAATCTCCACATGCCACGGGAGCGGCTCAAGAAAAGGCAAAAAGACAA
AAAAATAAAATTAAATTAAATTTTAAAAAATGAAAAGTGGAACACTAAGCAAGCTATCGA
ACACGGCAGAATGCTCCAGTTTGTGTGGGAAAGGTGGGAATTATGTGCGTAGCTTTAAAA
AAAAAAAAGTCTATATGCAATCTCCAAAGGGTATATCATAAACTGGTAGCAGTGATTACA
TTAAGAGTGAAACCAGGGGACTTGAGTTTAGGAAAAAGAAACAGATTTATTTTGACTTTG
TACTTTTGTAGATTTTTTTGTTTTTTTTTTTTTGGTATTTTATACCAAGGGCATGTATTA
ACTACATCGATAGTTGTGAAATAATGTTTCAGGAAATACAAAATGAAGTAAAAATGGAGA
GAGGAAGCTTTCACTTACACAGGGTGCTTTATGATCAGATAAAACTTGGGTCAACTTCTA
ATCATTCCACTGGCTAAAATTATAACCTCACATTAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               338-497, gnl|bosTau2|chr26 (11812876-11812717)
               

               
               338-497, gnl|canFam2|chr28 (15916723-15917052)
               

               
               338-497, gnl|dasNov1|scaffold_193576 (4161-3837)
               

               
               338-497, gnl|hg17|chr10 (101859751-101860098)
               

               
               338-497, gnl|Hg17|chr10 (101860052-101859891)
               

               
               338-497, gnl|loxAfr1|scaffold_25910 (43395-43073)
               

               
               338-497, gnl|mm7|chr19 (43902770-43903064)
               

               
               338-497, gnl|oryCun1|scaffold_207964 (4972-5308)
               

               
               338-497, gnl|panTro1|chr8 (103603187-103603534)
               

               
               338-497, gnl|rheMac2|chr9 (99707926-99708267)
               

               
               338-497, gnl|rn3|chr1 (249482636-249482350)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               338-497, gnl|bosTau2|chr26 (11812876-11812717)
               

               
               338-497, gnl|canFam2|chr28 (15916723-15917052)
               

               
               338-497, gnl|dasNov1|scaffold_193576 (4161-3837)
               

               
               338-497, gnl|hg17|chr10 (101859751-101860098)
               

               
               338-497, gnl|Hg17|chr10 (101860052-101859891)
               

               
               338-497, gnl|loxAfr1|scaffold_25910 (43395-43073)
               

               
               338-497, gnl|mm7|chr19 (43902770-43903064)
               

               
               338-497, gnl|oryCun1|scaffold_207964 (4972-5308)
               

               
               338-497, gnl|panTro1|chr8 (103603187-103603534)
               

               
               338-497, gnl|rheMac2|chr9 (99707926-99708267)
               

               
               338-497, gnl|rn3|chr1 (249482636-249482350)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	338-497, gnl\|bosTau2\|chr26 (11812876-11812717)
	338-497, gnl\|canFam2\|chr28 (15916723-15917052)
	338-497, gnl\|dasNov1\|scaffold_193576 (4161-3837)
	338-497, gnl\|hg17\|chr10 (101859751-101860098)
	338-497, gnl\|Hg17\|chr10 (101860052-101859891)
	338-497, gnl\|loxAfr1\|scaffold_25910 (43395-43073)
	338-497, gnl\|mm7\|chr19 (43902770-43903064)
	338-497, gnl\|oryCun1\|scaffold_207964 (4972-5308)
	338-497, gnl\|panTro1\|chr8 (103603187-103603534)
	338-497, gnl\|rheMac2\|chr9 (99707926-99708267)
	338-497, gnl\|rn3\|chr1 (249482636-249482350)