Non-Coding RNA Search

rcki29_j9.y1

Sequence:


               
               TTTCTTAATATTTCATACTCTCAAATCTATTATTTTACTCAGATTAGATTAGATTCTGTA
AATGGTTCCCAAATTATAAAATTACATTGCCTTAATCCTCTATCCCTTTTTGTGTTATGA
TGCTTTTACAGACCTCAGAGTAATATTTTTACATCTGTAGAGTATATCTTATGCTCACTC
TTAGGCACAGCCTAGTCTCAGAGACCATGTCTTAGGGCTGACAGTGGAAATGTGAGATCC
TGACTGTGCATGTAGGGTATCCAGACACTGCACACTCTGTTGTTTCAGCCGGGCTGGCAC
TGGGAAAAGGTCAGGGGGAATGAAATGTTAGTCTACATGGCAACACCAAACCAGCAGAGC
AGTGCAAGAGTAAAATCTGTAGGTAGGATGTGACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTAATATTTCATACTCTCAAATCTATTATTTTACTCAGATTAGATTAGATTCTGTA
AATGGTTCCCAAATTATAAAATTACATTGCCTTAATCCTCTATCCCTTTTTGTGTTATGA
TGCTTTTACAGACCTCAGAGTAATATTTTTACATCTGTAGAGTATATCTTATGCTCACTC
TTAGGCACAGCCTAGTCTCAGAGACCATGTCTTAGGGCTGACAGTGGAAATGTGAGATCC
TGACTGTGCATGTAGGGTATCCAGACACTGCACACTCTGTTGTTTCAGCCGGGCTGGCAC
TGGGAAAAGGTCAGGGGGAATGAAATGTTAGTCTACATGGCAACACCAAACCAGCAGAGC
AGTGCAAGAGTAAAATCTGTAGGTAGGATGTGACTTT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-397, gnl|bosTau2|chr6 (7798260-7797867)
               

               
               1-397, gnl|canFam2|chr32 (33524282-33524694)
               

               
               1-397, gnl|echTel1|scaffold_167949 (11294-11704)
               

               
               1-397, gnl|hg17|chr4 (111807672-111808086)
               

               
               1-397, gnl|Hg17|chr4 (111807686-111808084)
               

               
               1-397, gnl|loxAfr1|scaffold_12239 (10876-11312)
               

               
               1-397, gnl|mm7|chr3 (129134593-129134213)
               

               
               1-397, gnl|Mm7|chr3 (129134577-129134212)
               

               
               1-397, gnl|oryCun1|scaffold_204988 (33135-32727)
               

               
               1-397, gnl|panTro1|chr3 (128428094-128428508)
               

               
               1-397, gnl|rheMac2|chr5 (103445532-103445942)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-397, gnl|bosTau2|chr6 (7798260-7797867)
               

               
               1-397, gnl|canFam2|chr32 (33524282-33524694)
               

               
               1-397, gnl|echTel1|scaffold_167949 (11294-11704)
               

               
               1-397, gnl|hg17|chr4 (111807672-111808086)
               

               
               1-397, gnl|Hg17|chr4 (111807686-111808084)
               

               
               1-397, gnl|loxAfr1|scaffold_12239 (10876-11312)
               

               
               1-397, gnl|mm7|chr3 (129134593-129134213)
               

               
               1-397, gnl|Mm7|chr3 (129134577-129134212)
               

               
               1-397, gnl|oryCun1|scaffold_204988 (33135-32727)
               

               
               1-397, gnl|panTro1|chr3 (128428094-128428508)
               

               
               1-397, gnl|rheMac2|chr5 (103445532-103445942)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-397, gnl\|bosTau2\|chr6 (7798260-7797867)
	1-397, gnl\|canFam2\|chr32 (33524282-33524694)
	1-397, gnl\|echTel1\|scaffold_167949 (11294-11704)
	1-397, gnl\|hg17\|chr4 (111807672-111808086)
	1-397, gnl\|Hg17\|chr4 (111807686-111808084)
	1-397, gnl\|loxAfr1\|scaffold_12239 (10876-11312)
	1-397, gnl\|mm7\|chr3 (129134593-129134213)
	1-397, gnl\|Mm7\|chr3 (129134577-129134212)
	1-397, gnl\|oryCun1\|scaffold_204988 (33135-32727)
	1-397, gnl\|panTro1\|chr3 (128428094-128428508)
	1-397, gnl\|rheMac2\|chr5 (103445532-103445942)