Non-Coding RNA Search

rcki31_b24.y1

Sequence:


               
               ctacgccagagccacagcaacgcgggatccgagccgcgtctgcgacctaccccacagctc
atggcaatgccggatcgttaacccactgagcaagggcagggatcgaacccCTGGTGCTCA
GACTTTGGAAAAGTTGGAGAGCAGGGGAGAGGAATGTAGAACACTAAGCCATTGAGGTGT
GGAGAGGGGATTCCTGTCTTCTGGATATAACCAGTGACTGGCAAGATGGCAGTGAGTAAT
CCTAGATACAGGAGTTATGCATCTTCAACCCACTGGATATGCTAACTATGGGTGGTTCAA
ATCACCTAAAATAAGTTAATTTTCTTTTAAAAATTCCTACATCCTGATTTTATACCACTA
GAGGGAAGAAAAAGGCCAAAACAAAACCAATAGTACCTATACTACCATCCCAACTAGGTA
ATGCTGTAGTTGCTTATGGCAGATGTTAAGTAAAATGAAAACGTGTTATGGTCATAGGCT
TAATTGTTATGTGTGATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ctacgccagagccacagcaacgcgggatccgagccgcgtctgcgacctaccccacagctc
atggcaatgccggatcgttaacccactgagcaagggcagggatcgaacccCTGGTGCTCA
GACTTTGGAAAAGTTGGAGAGCAGGGGAGAGGAATGTAGAACACTAAGCCATTGAGGTGT
GGAGAGGGGATTCCTGTCTTCTGGATATAACCAGTGACTGGCAAGATGGCAGTGAGTAAT
CCTAGATACAGGAGTTATGCATCTTCAACCCACTGGATATGCTAACTATGGGTGGTTCAA
ATCACCTAAAATAAGTTAATTTTCTTTTAAAAATTCCTACATCCTGATTTTATACCACTA
GAGGGAAGAAAAAGGCCAAAACAAAACCAATAGTACCTATACTACCATCCCAACTAGGTA
ATGCTGTAGTTGCTTATGGCAGATGTTAAGTAAAATGAAAACGTGTTATGGTCATAGGCT
TAATTGTTATGTGTGATCT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               108-499, gnl|bosTau2|chr20 (11934802-11935191)
               

               
               108-499, gnl|canFam2|chr2 (48762548-48763046)
               

               
               108-499, gnl|dasNov1|scaffold_5822 (67593-67049)
               

               
               108-499, gnl|echTel1|scaffold_318414 (4252-4803)
               

               
               108-499, gnl|hg17|chr5 (58372867-58373384)
               

               
               108-499, gnl|Hg17|chr5 (58373293-58372904)
               

               
               108-499, gnl|loxAfr1|scaffold_16517 (30981-31544)
               

               
               108-499, gnl|mm7|chr13 (107051208-107050711)
               

               
               108-499, gnl|Mm7|chr13 (107050812-107051169)
               

               
               108-499, gnl|oryCun1|scaffold_201045 (42897-42379)
               

               
               108-499, gnl|panTro1|chr4 (57782793-57782261)
               

               
               108-499, gnl|rheMac2|chr6 (56706384-56706918)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               108-499, gnl|bosTau2|chr20 (11934802-11935191)
               

               
               108-499, gnl|canFam2|chr2 (48762548-48763046)
               

               
               108-499, gnl|dasNov1|scaffold_5822 (67593-67049)
               

               
               108-499, gnl|echTel1|scaffold_318414 (4252-4803)
               

               
               108-499, gnl|hg17|chr5 (58372867-58373384)
               

               
               108-499, gnl|Hg17|chr5 (58373293-58372904)
               

               
               108-499, gnl|loxAfr1|scaffold_16517 (30981-31544)
               

               
               108-499, gnl|mm7|chr13 (107051208-107050711)
               

               
               108-499, gnl|Mm7|chr13 (107050812-107051169)
               

               
               108-499, gnl|oryCun1|scaffold_201045 (42897-42379)
               

               
               108-499, gnl|panTro1|chr4 (57782793-57782261)
               

               
               108-499, gnl|rheMac2|chr6 (56706384-56706918)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	108-499, gnl\|bosTau2\|chr20 (11934802-11935191)
	108-499, gnl\|canFam2\|chr2 (48762548-48763046)
	108-499, gnl\|dasNov1\|scaffold_5822 (67593-67049)
	108-499, gnl\|echTel1\|scaffold_318414 (4252-4803)
	108-499, gnl\|hg17\|chr5 (58372867-58373384)
	108-499, gnl\|Hg17\|chr5 (58373293-58372904)
	108-499, gnl\|loxAfr1\|scaffold_16517 (30981-31544)
	108-499, gnl\|mm7\|chr13 (107051208-107050711)
	108-499, gnl\|Mm7\|chr13 (107050812-107051169)
	108-499, gnl\|oryCun1\|scaffold_201045 (42897-42379)
	108-499, gnl\|panTro1\|chr4 (57782793-57782261)
	108-499, gnl\|rheMac2\|chr6 (56706384-56706918)