Non-Coding RNA Search

rcki31_c19.y1

Sequence:


               
               GCTTAAAACTTTATGACCAACGCATGTCTCGACTGAAATAAAGAGGTGTGTTTTGGAAGG
ATTGCGGCACAATTCCAGTTCTGAGATTCTCCACCTTTCGTGGTCTTTGAACACGAGTGT
TCAGCTCCCTGTCCCGGAGCCCCACCCTGGAGGCTCATTTGCCCGCTGTCATCTCTGTGG
TTCAGATTCCTTATCTCACTCCTGCGAACTGGTTCTTTCCCCTGTGAGCACGGTGTCATC
AGTGCCAGCACTGCCCACAGCTCACCCCGCCTGAGAGCTACCTCCTCCCCTCCCATCGGA
CATCCAGCTGCACCCTGCCACGGTGCAAATCAGGCTGACGTCATCGTCCCTGTCGTCTGA
AGGACACGCCTCTGAGAACAGTAATTGCTAAAAATAATTTTTCCCCAGGTGACTGGAGAT
GTCAGATGACTTCGGAAAATGTGTAACTGTGAAAGTACATGCAAAAATTACAAAACAGAA
TTGGTGACGCTGGGATGGTCTGTTTTTCCAGACTTTGTGACTGAATGATGACTCTTCCAA
ATACTTAGGAAGCTTCTATAAAATTACTGTTTCTAGGTGACTTCTGAATTATTCGTTACT
TCCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTAAAACTTTATGACCAACGCATGTCTCGACTGAAATAAAGAGGTGTGTTTTGGAAGG
ATTGCGGCACAATTCCAGTTCTGAGATTCTCCACCTTTCGTGGTCTTTGAACACGAGTGT
TCAGCTCCCTGTCCCGGAGCCCCACCCTGGAGGCTCATTTGCCCGCTGTCATCTCTGTGG
TTCAGATTCCTTATCTCACTCCTGCGAACTGGTTCTTTCCCCTGTGAGCACGGTGTCATC
AGTGCCAGCACTGCCCACAGCTCACCCCGCCTGAGAGCTACCTCCTCCCCTCCCATCGGA
CATCCAGCTGCACCCTGCCACGGTGCAAATCAGGCTGACGTCATCGTCCCTGTCGTCTGA
AGGACACGCCTCTGAGAACAGTAATTGCTAAAAATAATTTTTCCCCAGGTGACTGGAGAT
GTCAGATGACTTCGGAAAATGTGTAACTGTGAAAGTACATGCAAAAATTACAAAACAGAA
TTGGTGACGCTGGGATGGTCTGTTTTTCCAGACTTTGTGACTGAATGATGACTCTTCCAA
ATACTTAGGAAGCTTCTATAAAATTACTGTTTCTAGGTGACTTCTGAATTATTCGTTACT
TCCATT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-219, gnl|bosTau2|chr8 (46523447-46523670)
               

               
               1-219, gnl|canFam2|chr1 (98769130-98768612)
               

               
               1-219, gnl|dasNov1|scaffold_8545 (43357-42717)
               

               
               1-219, gnl|hg17|chr9 (91060538-91061203)
               

               
               1-219, gnl|Hg17|chr9 (91061226-91060988)
               

               
               1-219, gnl|loxAfr1|scaffold_64893 (6047-5381)
               

               
               1-219, gnl|oryCun1|scaffold_200705 (56566-56020)
               

               
               1-219, gnl|panTro1|chr11 (75229498-75230163)
               

               
               1-219, gnl|rheMac2|chr15 (103026983-103027630)
               


               
               249-590, gnl|bosTau2|chr8 (46523727-46524068)
               

               
               249-590, gnl|canFam2|chr1 (98769130-98768612)
               

               
               249-590, gnl|dasNov1|scaffold_8545 (43357-42717)
               

               
               249-590, gnl|hg17|chr9 (91060538-91061203)
               

               
               249-590, gnl|Hg17|chr9 (91060943-91060587)
               

               
               249-590, gnl|loxAfr1|scaffold_64893 (6047-5381)
               

               
               249-590, gnl|oryCun1|scaffold_200705 (56566-56020)
               

               
               249-590, gnl|panTro1|chr11 (75229498-75230163)
               

               
               249-590, gnl|rheMac2|chr15 (103026983-103027630)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr8 (46523447-46523670)
               

               
               1-219, gnl|canFam2|chr1 (98769130-98768612)
               

               
               1-219, gnl|dasNov1|scaffold_8545 (43357-42717)
               

               
               1-219, gnl|hg17|chr9 (91060538-91061203)
               

               
               1-219, gnl|Hg17|chr9 (91061226-91060988)
               

               
               1-219, gnl|loxAfr1|scaffold_64893 (6047-5381)
               

               
               1-219, gnl|oryCun1|scaffold_200705 (56566-56020)
               

               
               1-219, gnl|panTro1|chr11 (75229498-75230163)
               

               
               1-219, gnl|rheMac2|chr15 (103026983-103027630)
               


               
               249-590, gnl|bosTau2|chr8 (46523727-46524068)
               

               
               249-590, gnl|canFam2|chr1 (98769130-98768612)
               

               
               249-590, gnl|dasNov1|scaffold_8545 (43357-42717)
               

               
               249-590, gnl|hg17|chr9 (91060538-91061203)
               

               
               249-590, gnl|Hg17|chr9 (91060943-91060587)
               

               
               249-590, gnl|loxAfr1|scaffold_64893 (6047-5381)
               

               
               249-590, gnl|oryCun1|scaffold_200705 (56566-56020)
               

               
               249-590, gnl|panTro1|chr11 (75229498-75230163)
               

               
               249-590, gnl|rheMac2|chr15 (103026983-103027630)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-219, gnl\|bosTau2\|chr8 (46523447-46523670)
	1-219, gnl\|canFam2\|chr1 (98769130-98768612)
	1-219, gnl\|dasNov1\|scaffold_8545 (43357-42717)
	1-219, gnl\|hg17\|chr9 (91060538-91061203)
	1-219, gnl\|Hg17\|chr9 (91061226-91060988)
	1-219, gnl\|loxAfr1\|scaffold_64893 (6047-5381)
	1-219, gnl\|oryCun1\|scaffold_200705 (56566-56020)
	1-219, gnl\|panTro1\|chr11 (75229498-75230163)
	1-219, gnl\|rheMac2\|chr15 (103026983-103027630)

	249-590, gnl\|bosTau2\|chr8 (46523727-46524068)
	249-590, gnl\|canFam2\|chr1 (98769130-98768612)
	249-590, gnl\|dasNov1\|scaffold_8545 (43357-42717)
	249-590, gnl\|hg17\|chr9 (91060538-91061203)
	249-590, gnl\|Hg17\|chr9 (91060943-91060587)
	249-590, gnl\|loxAfr1\|scaffold_64893 (6047-5381)
	249-590, gnl\|oryCun1\|scaffold_200705 (56566-56020)
	249-590, gnl\|panTro1\|chr11 (75229498-75230163)
	249-590, gnl\|rheMac2\|chr15 (103026983-103027630)