Non-Coding RNA Search

rcki32_o9.y1

Sequence:


               
               GAGGGTTCAGTGTTGAGAAATTGGTGTTTTAGAGTTAGTTCTACCCGGCGAGGAGGAGGA
GGAGGAGGAGGCGGGGAGAGAAACCGCGTTCTCTTCTCCCAGCGCAACTGAAATAAATGA
CACACACAAATGTGATTTTTTTCTCCTTTCTTCAGAGAAGCCAGTACTTGAATCGCTATA
TTTCTATTTTTTTTTCCTGTATCGTATTTGGCCCGGGCCATCCCTCCCCAGGCCTGGGGT
GCTCTGCGTGCAGATTTTGTACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGTTCAGTGTTGAGAAATTGGTGTTTTAGAGTTAGTTCTACCCGGCGAGGAGGAGGA
GGAGGAGGAGGCGGGGAGAGAAACCGCGTTCTCTTCTCCCAGCGCAACTGAAATAAATGA
CACACACAAATGTGATTTTTTTCTCCTTTCTTCAGAGAAGCCAGTACTTGAATCGCTATA
TTTCTATTTTTTTTTCCTGTATCGTATTTGGCCCGGGCCATCCCTCCCCAGGCCTGGGGT
GCTCTGCGTGCAGATTTTGTACAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-156, + strand, RNAz p=0.81119
               

               
               138-249, - strand, RNAz p=0.91297

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, + strand, RNAz p=0.81119
               

               
               138-249, - strand, RNAz p=0.91297

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006897, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006897, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-265, gnl|bosTau2|chr5 (16811671-16811411)
               

               
               1-265, gnl|dasNov1|scaffold_4404 (105223-105050)
               

               
               1-265, gnl|echTel1|scaffold_314778 (82799-82996)
               

               
               1-265, gnl|fr1|chrUn (164015327-164015501)
               

               
               1-265, gnl|hg17|chr12 (52682883-52683053)
               

               
               1-265, gnl|Hg17|chr12 (52682899-52683153)
               

               
               1-265, gnl|loxAfr1|scaffold_12227 (32221-32389)
               

               
               1-265, gnl|mm7|chr15 (102970464-102970632)
               

               
               1-265, gnl|Mm7|chr15 (102970480-102970824)
               

               
               1-265, gnl|oryCun1|scaffold_211595 (837-664)
               

               
               1-265, gnl|panTro1|chr10 (53931766-53931936)
               

               
               1-265, gnl|rheMac2|chr11 (51101250-51101419)
               

               
               1-265, gnl|rn3|chr7 (141826584-141826755)
               

               
               1-265, gnl|xenTro1|scaffold_280 (408769-408898)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr5 (16811671-16811411)
               

               
               1-265, gnl|dasNov1|scaffold_4404 (105223-105050)
               

               
               1-265, gnl|echTel1|scaffold_314778 (82799-82996)
               

               
               1-265, gnl|fr1|chrUn (164015327-164015501)
               

               
               1-265, gnl|hg17|chr12 (52682883-52683053)
               

               
               1-265, gnl|Hg17|chr12 (52682899-52683153)
               

               
               1-265, gnl|loxAfr1|scaffold_12227 (32221-32389)
               

               
               1-265, gnl|mm7|chr15 (102970464-102970632)
               

               
               1-265, gnl|Mm7|chr15 (102970480-102970824)
               

               
               1-265, gnl|oryCun1|scaffold_211595 (837-664)
               

               
               1-265, gnl|panTro1|chr10 (53931766-53931936)
               

               
               1-265, gnl|rheMac2|chr11 (51101250-51101419)
               

               
               1-265, gnl|rn3|chr7 (141826584-141826755)
               

               
               1-265, gnl|xenTro1|scaffold_280 (408769-408898)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-156, + strand, RNAz p=0.81119
	138-249, - strand, RNAz p=0.91297

	1-265, gnl\|bosTau2\|chr5 (16811671-16811411)
	1-265, gnl\|dasNov1\|scaffold_4404 (105223-105050)
	1-265, gnl\|echTel1\|scaffold_314778 (82799-82996)
	1-265, gnl\|fr1\|chrUn (164015327-164015501)
	1-265, gnl\|hg17\|chr12 (52682883-52683053)
	1-265, gnl\|Hg17\|chr12 (52682899-52683153)
	1-265, gnl\|loxAfr1\|scaffold_12227 (32221-32389)
	1-265, gnl\|mm7\|chr15 (102970464-102970632)
	1-265, gnl\|Mm7\|chr15 (102970480-102970824)
	1-265, gnl\|oryCun1\|scaffold_211595 (837-664)
	1-265, gnl\|panTro1\|chr10 (53931766-53931936)
	1-265, gnl\|rheMac2\|chr11 (51101250-51101419)
	1-265, gnl\|rn3\|chr7 (141826584-141826755)
	1-265, gnl\|xenTro1\|scaffold_280 (408769-408898)