Non-Coding RNA Search

rcki33_n21.y1

Sequence:


               
               TTCACTGTTCAGATAGGCCCAGCCAACCATTCCTAATAAGACTTAAATCAGAACTTCAGT
GTCCCAGGATGATCTCCATGGTAAAAATCTAGTGCACTGGTTATAAAAATAAGGTGGGAA
AATTCTTTTTAAGAATGTGTGATGGACCCTAAAAGGAGTAAATGAGGTGCATTCAAAGAT
TTGAAAGGGAAGAAGGAGCGTGTTTCCATGCATTAGAAAATAGTTAATTTAGGGGGAGAA
TGTTTTACTGATTCCAAGTCTCTGAAAAGACTGAATTCAAATCAATTCCACAAACATTTA
CTAACAACCTACTCACCCTGGGGACACAAAGATAAATTGAGTCTCAGACATGTCGTTTTC
TAACTGCTTTAGCACCTCTATTGTCTGTAGATCCTTTAATTTATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACTGTTCAGATAGGCCCAGCCAACCATTCCTAATAAGACTTAAATCAGAACTTCAGT
GTCCCAGGATGATCTCCATGGTAAAAATCTAGTGCACTGGTTATAAAAATAAGGTGGGAA
AATTCTTTTTAAGAATGTGTGATGGACCCTAAAAGGAGTAAATGAGGTGCATTCAAAGAT
TTGAAAGGGAAGAAGGAGCGTGTTTCCATGCATTAGAAAATAGTTAATTTAGGGGGAGAA
TGTTTTACTGATTCCAAGTCTCTGAAAAGACTGAATTCAAATCAATTCCACAAACATTTA
CTAACAACCTACTCACCCTGGGGACACAAAGATAAATTGAGTCTCAGACATGTCGTTTTC
TAACTGCTTTAGCACCTCTATTGTCTGTAGATCCTTTAATTTATT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               153-405, gnl|bosTau2|chr8 (43935299-43935553)
               

               
               153-405, gnl|canFam2|chr11 (71920147-71920420)
               

               
               153-405, gnl|dasNov1|scaffold_5284 (42863-43140)
               

               
               153-405, gnl|echTel1|scaffold_295479 (3988-4252)
               

               
               153-405, gnl|hg17|chr9 (114629114-114629390)
               

               
               153-405, gnl|Hg17|chr9 (114629450-114629206)
               

               
               153-405, gnl|loxAfr1|scaffold_11691 (45040-44765)
               

               
               153-405, gnl|mm7|chr4 (63160432-63160708)
               

               
               153-405, gnl|Mm7|chr4 (63160865-63160524)
               

               
               153-405, gnl|oryCun1|scaffold_207589 (47514-47235)
               

               
               153-405, gnl|panTro1|chr11 (99165398-99165675)
               

               
               153-405, gnl|rheMac2|chr15 (21323615-21323339)
               

               
               153-405, gnl|rn3|chr5 (80702235-80702495)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-405, gnl|bosTau2|chr8 (43935299-43935553)
               

               
               153-405, gnl|canFam2|chr11 (71920147-71920420)
               

               
               153-405, gnl|dasNov1|scaffold_5284 (42863-43140)
               

               
               153-405, gnl|echTel1|scaffold_295479 (3988-4252)
               

               
               153-405, gnl|hg17|chr9 (114629114-114629390)
               

               
               153-405, gnl|Hg17|chr9 (114629450-114629206)
               

               
               153-405, gnl|loxAfr1|scaffold_11691 (45040-44765)
               

               
               153-405, gnl|mm7|chr4 (63160432-63160708)
               

               
               153-405, gnl|Mm7|chr4 (63160865-63160524)
               

               
               153-405, gnl|oryCun1|scaffold_207589 (47514-47235)
               

               
               153-405, gnl|panTro1|chr11 (99165398-99165675)
               

               
               153-405, gnl|rheMac2|chr15 (21323615-21323339)
               

               
               153-405, gnl|rn3|chr5 (80702235-80702495)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cki (0.165235)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	153-405, gnl\|bosTau2\|chr8 (43935299-43935553)
	153-405, gnl\|canFam2\|chr11 (71920147-71920420)
	153-405, gnl\|dasNov1\|scaffold_5284 (42863-43140)
	153-405, gnl\|echTel1\|scaffold_295479 (3988-4252)
	153-405, gnl\|hg17\|chr9 (114629114-114629390)
	153-405, gnl\|Hg17\|chr9 (114629450-114629206)
	153-405, gnl\|loxAfr1\|scaffold_11691 (45040-44765)
	153-405, gnl\|mm7\|chr4 (63160432-63160708)
	153-405, gnl\|Mm7\|chr4 (63160865-63160524)
	153-405, gnl\|oryCun1\|scaffold_207589 (47514-47235)
	153-405, gnl\|panTro1\|chr11 (99165398-99165675)
	153-405, gnl\|rheMac2\|chr15 (21323615-21323339)
	153-405, gnl\|rn3\|chr5 (80702235-80702495)