Non-Coding RNA Search

rcki35_a20.y1

Sequence:


               
               ATTGGGAGGGCTTCTCCAAGGGTGGCCCACCTCCTCTCCCACTGCTGGGGTCCCACGGCC
ACTCTCCTGCATGTCTAAGTGGAGGAAGGCCTGCCTTCCTCCCCATCGCCTCCACCTCTC
AGCCAGACTCATCTAAGGCTTCTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGGGAGGGCTTCTCCAAGGGTGGCCCACCTCCTCTCCCACTGCTGGGGTCCCACGGCC
ACTCTCCTGCATGTCTAAGTGGAGGAAGGCCTGCCTTCCTCCCCATCGCCTCCACCTCTC
AGCCAGACTCATCTAAGGCTTCTTGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-116, - strand, RNAz p=0.979383
               

               
               19-111, - strand, RNAz p=0.632994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, - strand, RNAz p=0.979383
               

               
               19-111, - strand, RNAz p=0.632994

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-147, gnl|bosTau2|chr2 (64350938-64350790)
               

               
               1-147, gnl|canFam2|chr37 (29058983-29059412)
               

               
               1-147, gnl|dasNov1|scaffold_47634 (16189-16588)
               

               
               1-147, gnl|echTel1|scaffold_239017 (7269-7618)
               

               
               1-147, gnl|hg17|chr2 (220240137-220240549)
               

               
               1-147, gnl|Hg17|chr2 (220240413-220240556)
               

               
               1-147, gnl|mm7|chr1 (75711235-75711631)
               

               
               1-147, gnl|Mm7|chr1 (75711492-75711638)
               

               
               1-147, gnl|monDom2|scaffold_864 (687-248)
               

               
               1-147, gnl|oryCun1|scaffold_209686 (47199-47586)
               

               
               1-147, gnl|panTro1|chr13 (110405236-110405648)
               

               
               1-147, gnl|rheMac2|chr12 (83397965-83398377)
               

               
               1-147, gnl|rn3|chr9 (74907296-74907692)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-147, gnl|bosTau2|chr2 (64350938-64350790)
               

               
               1-147, gnl|canFam2|chr37 (29058983-29059412)
               

               
               1-147, gnl|dasNov1|scaffold_47634 (16189-16588)
               

               
               1-147, gnl|echTel1|scaffold_239017 (7269-7618)
               

               
               1-147, gnl|hg17|chr2 (220240137-220240549)
               

               
               1-147, gnl|Hg17|chr2 (220240413-220240556)
               

               
               1-147, gnl|mm7|chr1 (75711235-75711631)
               

               
               1-147, gnl|Mm7|chr1 (75711492-75711638)
               

               
               1-147, gnl|monDom2|scaffold_864 (687-248)
               

               
               1-147, gnl|oryCun1|scaffold_209686 (47199-47586)
               

               
               1-147, gnl|panTro1|chr13 (110405236-110405648)
               

               
               1-147, gnl|rheMac2|chr12 (83397965-83398377)
               

               
               1-147, gnl|rn3|chr9 (74907296-74907692)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cki (0.165235)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)

	1-116, - strand, RNAz p=0.979383
	19-111, - strand, RNAz p=0.632994

	1-147, gnl\|bosTau2\|chr2 (64350938-64350790)
	1-147, gnl\|canFam2\|chr37 (29058983-29059412)
	1-147, gnl\|dasNov1\|scaffold_47634 (16189-16588)
	1-147, gnl\|echTel1\|scaffold_239017 (7269-7618)
	1-147, gnl\|hg17\|chr2 (220240137-220240549)
	1-147, gnl\|Hg17\|chr2 (220240413-220240556)
	1-147, gnl\|mm7\|chr1 (75711235-75711631)
	1-147, gnl\|Mm7\|chr1 (75711492-75711638)
	1-147, gnl\|monDom2\|scaffold_864 (687-248)
	1-147, gnl\|oryCun1\|scaffold_209686 (47199-47586)
	1-147, gnl\|panTro1\|chr13 (110405236-110405648)
	1-147, gnl\|rheMac2\|chr12 (83397965-83398377)
	1-147, gnl\|rn3\|chr9 (74907296-74907692)