Non-Coding RNA Search

rcli11b_m24.y1

Sequence:


               
               GCGGGGAACAACGTCCCATGACTGTTCTTGCAGAACCTGGTCTGTTTAAGGGCAGAGGTT
GCAAACAGGAGGCCTGCAGGCCTTATTAGGTGAGAAGATGGGTTTGCTTGGCCCCATCCG
TGTTTGAGGCATTTAGAATTAGTTGCCAAAACTTAAAACCAAGGAAATTACCCCTGCCAA
TCTACAATGGAAGTTCCTCTAGAAAACTTGCCTGCACTGCCTGCTGGTGAAGCTGCATAG
AGGTTGCCCATCTTTGCCACAGTCCCCACCACTCCTTTTTGCCTCTCCATGGCATGCTGG
GCTGGCTGATAGATTAGGACCCCAGATTCAGGGCAGTGTCTCTATTTGGTTTCCGCTGCC
CTGCAAAAGCCAAAGGCTTTCACCCAAGAGCCAGTGGTTCCTATCTCTCTCTGCCCTCCA
TTCCTAAGGCAAACGTACCCTCTTATCTCAGGTCAAGAAACAGATCTTCAAATTCGAGTA
CAAACATGCATTCTGGTTATGTCATGAAGCCCAAAATGAAATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGGAACAACGTCCCATGACTGTTCTTGCAGAACCTGGTCTGTTTAAGGGCAGAGGTT
GCAAACAGGAGGCCTGCAGGCCTTATTAGGTGAGAAGATGGGTTTGCTTGGCCCCATCCG
TGTTTGAGGCATTTAGAATTAGTTGCCAAAACTTAAAACCAAGGAAATTACCCCTGCCAA
TCTACAATGGAAGTTCCTCTAGAAAACTTGCCTGCACTGCCTGCTGGTGAAGCTGCATAG
AGGTTGCCCATCTTTGCCACAGTCCCCACCACTCCTTTTTGCCTCTCCATGGCATGCTGG
GCTGGCTGATAGATTAGGACCCCAGATTCAGGGCAGTGTCTCTATTTGGTTTCCGCTGCC
CTGCAAAAGCCAAAGGCTTTCACCCAAGAGCCAGTGGTTCCTATCTCTCTCTGCCCTCCA
TTCCTAAGGCAAACGTACCCTCTTATCTCAGGTCAAGAAACAGATCTTCAAATTCGAGTA
CAAACATGCATTCTGGTTATGTCATGAAGCCCAAAATGAAATCCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               186-432, - strand, RNAz p=0.999237

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-432, - strand, RNAz p=0.999237

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               29-525, gnl|bosTau2|chr7 (15263568-15264065)
               

               
               29-525, gnl|canFam2|chr20 (58043884-58043327)
               

               
               29-525, gnl|hg17|chr19 (4605618-4606239)
               

               
               29-525, gnl|Hg17|chr19 (4605922-4606426)
               

               
               29-525, gnl|loxAfr1|scaffold_62292 (9100-9666)
               

               
               29-525, gnl|panTro1|chr20 (4883084-4883680)
               

               
               29-525, gnl|rheMac2|chr19 (4532800-4533420)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-525, gnl|bosTau2|chr7 (15263568-15264065)
               

               
               29-525, gnl|canFam2|chr20 (58043884-58043327)
               

               
               29-525, gnl|hg17|chr19 (4605618-4606239)
               

               
               29-525, gnl|Hg17|chr19 (4605922-4606426)
               

               
               29-525, gnl|loxAfr1|scaffold_62292 (9100-9666)
               

               
               29-525, gnl|panTro1|chr20 (4883084-4883680)
               

               
               29-525, gnl|rheMac2|chr19 (4532800-4533420)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cli (0.152812)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)

	29-525, gnl\|bosTau2\|chr7 (15263568-15264065)
	29-525, gnl\|canFam2\|chr20 (58043884-58043327)
	29-525, gnl\|hg17\|chr19 (4605618-4606239)
	29-525, gnl\|Hg17\|chr19 (4605922-4606426)
	29-525, gnl\|loxAfr1\|scaffold_62292 (9100-9666)
	29-525, gnl\|panTro1\|chr20 (4883084-4883680)
	29-525, gnl\|rheMac2\|chr19 (4532800-4533420)