Non-Coding RNA Search

rcli17b_i17.y1

Sequence:


               
               CCCGGCTCCTCCTGCCTGTGACCCCCGACTCCTAAATAAACTGCTTCGTGACTCCCATGT
CCTTCACGGCAGACTGAGCCAGTGCCCAGACATTAACCCTTTGTCCACACCTGTCCTGCT
GCCTGCTGTGGACTTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGCTCCTCCTGCCTGTGACCCCCGACTCCTAAATAAACTGCTTCGTGACTCCCATGT
CCTTCACGGCAGACTGAGCCAGTGCCCAGACATTAACCCTTTGTCCACACCTGTCCTGCT
GCCTGCTGTGGACTTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1174763|sp|P42706|TPO_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1174763|sp|P42706|TPO_PIG

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-108, gnl|bosTau2|chr1 (52137342-52137451)
               

               
               1-108, gnl|canFam2|chr34 (20258592-20259192)
               

               
               1-108, gnl|hg17|chr3 (185576188-185576777)
               

               
               1-108, gnl|Hg17|chr3 (185576453-185576345)
               

               
               1-108, gnl|mm7|chr16 (20277549-20278091)
               

               
               1-108, gnl|Mm7|chr16 (20277781-20277672)
               

               
               1-108, gnl|monDom2|scaffold_180 (130145-130762)
               

               
               1-108, gnl|oryCun1|scaffold_212610 (47188-46603)
               

               
               1-108, gnl|panTro1|chr2 (189532880-189533466)
               

               
               1-108, gnl|rheMac2|chr2 (102287930-102287344)
               

               
               1-108, gnl|rn3|chr11 (82472083-82471544)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-108, gnl|bosTau2|chr1 (52137342-52137451)
               

               
               1-108, gnl|canFam2|chr34 (20258592-20259192)
               

               
               1-108, gnl|hg17|chr3 (185576188-185576777)
               

               
               1-108, gnl|Hg17|chr3 (185576453-185576345)
               

               
               1-108, gnl|mm7|chr16 (20277549-20278091)
               

               
               1-108, gnl|Mm7|chr16 (20277781-20277672)
               

               
               1-108, gnl|monDom2|scaffold_180 (130145-130762)
               

               
               1-108, gnl|oryCun1|scaffold_212610 (47188-46603)
               

               
               1-108, gnl|panTro1|chr2 (189532880-189533466)
               

               
               1-108, gnl|rheMac2|chr2 (102287930-102287344)
               

               
               1-108, gnl|rn3|chr11 (82472083-82471544)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cli (0.152812)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)

	1-108, gnl\|bosTau2\|chr1 (52137342-52137451)
	1-108, gnl\|canFam2\|chr34 (20258592-20259192)
	1-108, gnl\|hg17\|chr3 (185576188-185576777)
	1-108, gnl\|Hg17\|chr3 (185576453-185576345)
	1-108, gnl\|mm7\|chr16 (20277549-20278091)
	1-108, gnl\|Mm7\|chr16 (20277781-20277672)
	1-108, gnl\|monDom2\|scaffold_180 (130145-130762)
	1-108, gnl\|oryCun1\|scaffold_212610 (47188-46603)
	1-108, gnl\|panTro1\|chr2 (189532880-189533466)
	1-108, gnl\|rheMac2\|chr2 (102287930-102287344)
	1-108, gnl\|rn3\|chr11 (82472083-82471544)