Non-Coding RNA Search

rcly07b_m20.y1

Sequence:


               
               AGGAGATGAAGGCCCCATGGGACTGAAAGGGTACCTGGGCTTGAAAGGTATCCCTGGAAT
GCCAGGCATCCCGGGACTGTCAGGAGTCCCTGGGCTGCCAGGGAAGCCAGGCCACGTCAA
AGGAGCCAAAGGAGACACCGGAGCCCCTGGTGTGCCCGGGTCACCGGGATTCCCCGGGCT
GCCCGGCCCCCCCGGAATCATCGGGTTCCCCGGCTTCACGGGCAGTAGGGGTGACAAGGG
ATCCCCAGGGAGAGCAGGCCTTTACGGTGAGATCGGAGCCACCGGTGATTTCGGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGATGAAGGCCCCATGGGACTGAAAGGGTACCTGGGCTTGAAAGGTATCCCTGGAAT
GCCAGGCATCCCGGGACTGTCAGGAGTCCCTGGGCTGCCAGGGAAGCCAGGCCACGTCAA
AGGAGCCAAAGGAGACACCGGAGCCCCTGGTGTGCCCGGGTCACCGGGATTCCCCGGGCT
GCCCGGCCCCCCCGGAATCATCGGGTTCCCCGGCTTCACGGGCAGTAGGGGTGACAAGGG
ATCCCCAGGGAGAGCAGGCCTTTACGGTGAGATCGGAGCCACCGGTGATTTCGGTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-204, - strand, RNAz p=0.961495

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-204, - strand, RNAz p=0.961495

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               46-230, gnl|bosTau2|chr12 (46243676-46243492)
               

               
               46-230, gnl|canFam2|chr22 (61756897-61757096)
               

               
               46-230, gnl|dasNov1|scaffold_3253 (55193-54996)
               

               
               46-230, gnl|echTel1|scaffold_193472 (738-539)
               

               
               46-230, gnl|hg17|chr13 (109935993-109936192)
               

               
               46-230, gnl|Hg17|chr13 (109936001-109936185)
               

               
               46-230, gnl|loxAfr1|scaffold_991 (59775-59576)
               

               
               46-230, gnl|mm7|chr8 (11405925-11406124)
               

               
               46-230, gnl|Mm7|chr8 (11405933-11406117)
               

               
               46-230, gnl|monDom2|scaffold_11 (36686744-36686545)
               

               
               46-230, gnl|oryCun1|scaffold_198946 (65833-65642)
               

               
               46-230, gnl|panTro1|chr14 (93376531-93376732)
               

               
               46-230, gnl|rheMac2|chr17 (90562239-90562438)
               

               
               46-230, gnl|rn3|chr16 (82896081-82895882)
               

               
               46-230, gnl|tetNig1|chr2 (9435358-9435181)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-230, gnl|bosTau2|chr12 (46243676-46243492)
               

               
               46-230, gnl|canFam2|chr22 (61756897-61757096)
               

               
               46-230, gnl|dasNov1|scaffold_3253 (55193-54996)
               

               
               46-230, gnl|echTel1|scaffold_193472 (738-539)
               

               
               46-230, gnl|hg17|chr13 (109935993-109936192)
               

               
               46-230, gnl|Hg17|chr13 (109936001-109936185)
               

               
               46-230, gnl|loxAfr1|scaffold_991 (59775-59576)
               

               
               46-230, gnl|mm7|chr8 (11405925-11406124)
               

               
               46-230, gnl|Mm7|chr8 (11405933-11406117)
               

               
               46-230, gnl|monDom2|scaffold_11 (36686744-36686545)
               

               
               46-230, gnl|oryCun1|scaffold_198946 (65833-65642)
               

               
               46-230, gnl|panTro1|chr14 (93376531-93376732)
               

               
               46-230, gnl|rheMac2|chr17 (90562239-90562438)
               

               
               46-230, gnl|rn3|chr16 (82896081-82895882)
               

               
               46-230, gnl|tetNig1|chr2 (9435358-9435181)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	46-230, gnl\|bosTau2\|chr12 (46243676-46243492)
	46-230, gnl\|canFam2\|chr22 (61756897-61757096)
	46-230, gnl\|dasNov1\|scaffold_3253 (55193-54996)
	46-230, gnl\|echTel1\|scaffold_193472 (738-539)
	46-230, gnl\|hg17\|chr13 (109935993-109936192)
	46-230, gnl\|Hg17\|chr13 (109936001-109936185)
	46-230, gnl\|loxAfr1\|scaffold_991 (59775-59576)
	46-230, gnl\|mm7\|chr8 (11405925-11406124)
	46-230, gnl\|Mm7\|chr8 (11405933-11406117)
	46-230, gnl\|monDom2\|scaffold_11 (36686744-36686545)
	46-230, gnl\|oryCun1\|scaffold_198946 (65833-65642)
	46-230, gnl\|panTro1\|chr14 (93376531-93376732)
	46-230, gnl\|rheMac2\|chr17 (90562239-90562438)
	46-230, gnl\|rn3\|chr16 (82896081-82895882)
	46-230, gnl\|tetNig1\|chr2 (9435358-9435181)