Non-Coding RNA Search

rcly17b_f14.y1

Sequence:


               
               GTCGGAGTGCTGAAGCTCTTTGAACAATGTGGAGATACTTGATTCAATGAATGTGTTGAG
TTATGGAATTTCATCTCTTAAATGCATCCCAAAAGACTTAATGAAATTTCAGCAGTGTAT
TCAGCAGCTATATTCAGTGGGGAGTAATCATTACACTGATGAAACTTTCCCCAAATTTAC
TTGTCTCTCTTTAGAATCCACAAAGCAAACTACAGATTTTTGTTTTTTTGTTTTTTTAAA
CCACATATGGATCTCTCCTACAAAGGGGTGGGAGGTGTAAACTCTTTAAGACTCTTCATT
TTCTGCATGTGTGGCAGTGTAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGAGTGCTGAAGCTCTTTGAACAATGTGGAGATACTTGATTCAATGAATGTGTTGAG
TTATGGAATTTCATCTCTTAAATGCATCCCAAAAGACTTAATGAAATTTCAGCAGTGTAT
TCAGCAGCTATATTCAGTGGGGAGTAATCATTACACTGATGAAACTTTCCCCAAATTTAC
TTGTCTCTCTTTAGAATCCACAAAGCAAACTACAGATTTTTGTTTTTTTGTTTTTTTAAA
CCACATATGGATCTCTCCTACAAAGGGGTGGGAGGTGTAAACTCTTTAAGACTCTTCATT
TTCTGCATGTGTGGCAGTGTAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-324, + strand, RNAz p=0.954144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-324, + strand, RNAz p=0.954144

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-324, gnl|bosTau2|chr7 (2437864-2437564)
               

               
               1-324, gnl|canFam2|chr20 (47133500-47133240)
               

               
               1-324, gnl|hg17|chr19 (18964741-18964971)
               

               
               1-324, gnl|Hg17|chr19 (18965051-18964779)
               

               
               1-324, gnl|monDom2|scaffold_75 (1796876-1797162)
               

               
               1-324, gnl|panTro1|chr20 (20037176-20037406)
               

               
               1-324, gnl|rheMac2|chr19 (18626009-18626239)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-324, gnl|bosTau2|chr7 (2437864-2437564)
               

               
               1-324, gnl|canFam2|chr20 (47133500-47133240)
               

               
               1-324, gnl|hg17|chr19 (18964741-18964971)
               

               
               1-324, gnl|Hg17|chr19 (18965051-18964779)
               

               
               1-324, gnl|monDom2|scaffold_75 (1796876-1797162)
               

               
               1-324, gnl|panTro1|chr20 (20037176-20037406)
               

               
               1-324, gnl|rheMac2|chr19 (18626009-18626239)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	1-324, gnl\|bosTau2\|chr7 (2437864-2437564)
	1-324, gnl\|canFam2\|chr20 (47133500-47133240)
	1-324, gnl\|hg17\|chr19 (18964741-18964971)
	1-324, gnl\|Hg17\|chr19 (18965051-18964779)
	1-324, gnl\|monDom2\|scaffold_75 (1796876-1797162)
	1-324, gnl\|panTro1\|chr20 (20037176-20037406)
	1-324, gnl\|rheMac2\|chr19 (18626009-18626239)