Non-Coding RNA Search

rcly27b_f16.y1

Sequence:


               
               CTGCAGGAATCGGCATGAGGAAGGTTTAAACTGTGCATTGCATTCCTGGCCAAATTGCCT
TTGTCCGTGTGTCCTAACAGAGGGATGACCAAGCTCATCTAGAGAAATTTCTCAAAGACC
AGGAAGGATGTTGCCCATTTCCCAGACGTTTCCAGTTGGATCAAGGAGCTATTTCATTCA
GCTTCGGAAAGGAGTCAGAGCCAAGGCTTGTCTACCTTCTGGAGCTGCTATGTTTTCTTT
TGGCTCTGGAGAGATCAAATGGTTTTGGCACATCAGGAGGTTTGAAACAAGCTGGGAAAC
CAAAACCACAGTGGGTGGGAAACATGGCGGTCTCCACACGGCTTGACCAGGTGTCTGCGT
AAAGTTGCCCCAGCGGATTGGGGGGAGCCCATAGGAGCATCCGGGAGCTTCGCTCAGTAG
TGAGGTCACAGTGATAGAGCAAGTAAGAGAACACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGGAATCGGCATGAGGAAGGTTTAAACTGTGCATTGCATTCCTGGCCAAATTGCCT
TTGTCCGTGTGTCCTAACAGAGGGATGACCAAGCTCATCTAGAGAAATTTCTCAAAGACC
AGGAAGGATGTTGCCCATTTCCCAGACGTTTCCAGTTGGATCAAGGAGCTATTTCATTCA
GCTTCGGAAAGGAGTCAGAGCCAAGGCTTGTCTACCTTCTGGAGCTGCTATGTTTTCTTT
TGGCTCTGGAGAGATCAAATGGTTTTGGCACATCAGGAGGTTTGAAACAAGCTGGGAAAC
CAAAACCACAGTGGGTGGGAAACATGGCGGTCTCCACACGGCTTGACCAGGTGTCTGCGT
AAAGTTGCCCCAGCGGATTGGGGGGAGCCCATAGGAGCATCCGGGAGCTTCGCTCAGTAG
TGAGGTCACAGTGATAGAGCAAGTAAGAGAACACTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               162-305, - strand, RNAz p=0.999428
               

               
               171-278, + strand, RNAz p=0.646893

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-305, - strand, RNAz p=0.999428
               

               
               171-278, + strand, RNAz p=0.646893

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               209-290, + strand, RNAmicro p=0.902437

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               209-290, + strand, RNAmicro p=0.902437

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               21-344, gnl|bosTau2|chr13 (56264241-56263909)
               

               
               21-344, gnl|canFam2|chr24 (34928780-34929084)
               

               
               21-344, gnl|dasNov1|scaffold_16498 (45343-45065)
               

               
               21-344, gnl|hg17|chr20 (42553857-42554141)
               

               
               21-344, gnl|Hg17|chr20 (42553917-42554241)
               

               
               21-344, gnl|loxAfr1|scaffold_25838 (10065-10353)
               

               
               21-344, gnl|mm7|chr2 (163358215-163358451)
               

               
               21-344, gnl|oryCun1|scaffold_176362 (52494-52775)
               

               
               21-344, gnl|panTro1|chr21 (44994632-44994916)
               

               
               21-344, gnl|rheMac2|chr10 (19957840-19957564)
               

               
               21-344, gnl|rn3|chr3 (154438784-154439039)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-344, gnl|bosTau2|chr13 (56264241-56263909)
               

               
               21-344, gnl|canFam2|chr24 (34928780-34929084)
               

               
               21-344, gnl|dasNov1|scaffold_16498 (45343-45065)
               

               
               21-344, gnl|hg17|chr20 (42553857-42554141)
               

               
               21-344, gnl|Hg17|chr20 (42553917-42554241)
               

               
               21-344, gnl|loxAfr1|scaffold_25838 (10065-10353)
               

               
               21-344, gnl|mm7|chr2 (163358215-163358451)
               

               
               21-344, gnl|oryCun1|scaffold_176362 (52494-52775)
               

               
               21-344, gnl|panTro1|chr21 (44994632-44994916)
               

               
               21-344, gnl|rheMac2|chr10 (19957840-19957564)
               

               
               21-344, gnl|rn3|chr3 (154438784-154439039)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	162-305, - strand, RNAz p=0.999428
	171-278, + strand, RNAz p=0.646893

	21-344, gnl\|bosTau2\|chr13 (56264241-56263909)
	21-344, gnl\|canFam2\|chr24 (34928780-34929084)
	21-344, gnl\|dasNov1\|scaffold_16498 (45343-45065)
	21-344, gnl\|hg17\|chr20 (42553857-42554141)
	21-344, gnl\|Hg17\|chr20 (42553917-42554241)
	21-344, gnl\|loxAfr1\|scaffold_25838 (10065-10353)
	21-344, gnl\|mm7\|chr2 (163358215-163358451)
	21-344, gnl\|oryCun1\|scaffold_176362 (52494-52775)
	21-344, gnl\|panTro1\|chr21 (44994632-44994916)
	21-344, gnl\|rheMac2\|chr10 (19957840-19957564)
	21-344, gnl\|rn3\|chr3 (154438784-154439039)