Non-Coding RNA Search

rcmu22_j12.y1

Sequence:


               
               GGAAACTATGCGGAAGACCCAGGTTCAAAGTATAAGCTCTGATGAGTCAACTCAGGAAAT
TGTAAGAGATGCACTTGGCTCAAGAGCAGAAGAGCTAGATGTCAATTCATGGTCAAGGTG
CTGAAGAAACCTGAAAACAGTGGGAAATTGCAGAGCAGAATTGCAGAGAGAGTGGTACCT
TTACTTCCTGACCAATTTATTTGATGTTCCAGGATAGGGAAGTGGTGCTTCATCACATGG
CTGGGGATGTCCTTCTCACAATTTTAAAGTTGAGAAGCTATATGTAGATGCATATTGATA
TTGAAAAGAAAAACTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACTATGCGGAAGACCCAGGTTCAAAGTATAAGCTCTGATGAGTCAACTCAGGAAAT
TGTAAGAGATGCACTTGGCTCAAGAGCAGAAGAGCTAGATGTCAATTCATGGTCAAGGTG
CTGAAGAAACCTGAAAACAGTGGGAAATTGCAGAGCAGAATTGCAGAGAGAGTGGTACCT
TTACTTCCTGACCAATTTATTTGATGTTCCAGGATAGGGAAGTGGTGCTTCATCACATGG
CTGGGGATGTCCTTCTCACAATTTTAAAGTTGAGAAGCTATATGTAGATGCATATTGATA
TTGAAAAGAAAAACTGAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               17-110, - strand, RNAz p=0.838117

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               17-110, - strand, RNAz p=0.838117

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               17-310, gnl|bosTau2|chr5 (67866509-67866790)
               

               
               17-310, gnl|canFam2|chr10 (29170787-29170472)
               

               
               17-310, gnl|dasNov1|scaffold_183420 (1177-865)
               

               
               17-310, gnl|hg17|chr22 (37428014-37428290)
               

               
               17-310, gnl|Hg17|chr22 (37428046-37428325)
               

               
               17-310, gnl|mm7|chr15 (79776959-79777208)
               

               
               17-310, gnl|Mm7|chr15 (79776991-79777239)
               

               
               17-310, gnl|panTro1|chr23 (37652339-37652615)
               

               
               17-310, gnl|rheMac2|chr10 (82620819-82621092)
               

               
               17-310, gnl|rn3|chr7 (117970190-117970425)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-310, gnl|bosTau2|chr5 (67866509-67866790)
               

               
               17-310, gnl|canFam2|chr10 (29170787-29170472)
               

               
               17-310, gnl|dasNov1|scaffold_183420 (1177-865)
               

               
               17-310, gnl|hg17|chr22 (37428014-37428290)
               

               
               17-310, gnl|Hg17|chr22 (37428046-37428325)
               

               
               17-310, gnl|mm7|chr15 (79776959-79777208)
               

               
               17-310, gnl|Mm7|chr15 (79776991-79777239)
               

               
               17-310, gnl|panTro1|chr23 (37652339-37652615)
               

               
               17-310, gnl|rheMac2|chr10 (82620819-82621092)
               

               
               17-310, gnl|rn3|chr7 (117970190-117970425)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	17-310, gnl\|bosTau2\|chr5 (67866509-67866790)
	17-310, gnl\|canFam2\|chr10 (29170787-29170472)
	17-310, gnl\|dasNov1\|scaffold_183420 (1177-865)
	17-310, gnl\|hg17\|chr22 (37428014-37428290)
	17-310, gnl\|Hg17\|chr22 (37428046-37428325)
	17-310, gnl\|mm7\|chr15 (79776959-79777208)
	17-310, gnl\|Mm7\|chr15 (79776991-79777239)
	17-310, gnl\|panTro1\|chr23 (37652339-37652615)
	17-310, gnl\|rheMac2\|chr10 (82620819-82621092)
	17-310, gnl\|rn3\|chr7 (117970190-117970425)