Non-Coding RNA Search

rcmu24_d5.y1

Sequence:


               
               AGGAAATTATTTCAAAAAGCAATGAAGTTATTAAGCTATAACACAGGTCAGGTTGTCATT
GTATTTTTTACCATTTAATGTGTGAATTTTCACATTTCTGAAAGGTGTCCTATTCAAACT
GTTCAAAGGTTACTAATCAAAAGAATTCACATTCATTTGCTCGAACCCAGTGTAAATATA
TTTCAAAGAGGAGAAACAAAAAAGAAAACCCCCCAGCTTGCTTCTAGAAGCTGAGAAATG
CTGGAGATCCTGTCCTCCAACAGCTCAATGATGAAACATTTCCGAGCTATTTCTTAATCT
CAGACATATATTTTTAGGGTGACCTCTACAAATGATTTTATGATGGGTATGCATTTATCA
ATAAGCACTTGGCAAGCTGCTGCCACATGTGAGACTCATGCCAGGGGCTGAGGGCACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAATTATTTCAAAAAGCAATGAAGTTATTAAGCTATAACACAGGTCAGGTTGTCATT
GTATTTTTTACCATTTAATGTGTGAATTTTCACATTTCTGAAAGGTGTCCTATTCAAACT
GTTCAAAGGTTACTAATCAAAAGAATTCACATTCATTTGCTCGAACCCAGTGTAAATATA
TTTCAAAGAGGAGAAACAAAAAAGAAAACCCCCCAGCTTGCTTCTAGAAGCTGAGAAATG
CTGGAGATCCTGTCCTCCAACAGCTCAATGATGAAACATTTCCGAGCTATTTCTTAATCT
CAGACATATATTTTTAGGGTGACCTCTACAAATGATTTTATGATGGGTATGCATTTATCA
ATAAGCACTTGGCAAGCTGCTGCCACATGTGAGACTCATGCCAGGGGCTGAGGGCACAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               209-318, - strand, RNAz p=0.906102
               

               
               220-338, - strand, RNAz p=0.60858

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-318, - strand, RNAz p=0.906102
               

               
               220-338, - strand, RNAz p=0.60858

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-382, gnl|bosTau2|chr4 (47790224-47789847)
               

               
               1-382, gnl|dasNov1|scaffold_79272 (4595-4139)
               

               
               1-382, gnl|hg17|chr7 (121317017-121317473)
               

               
               1-382, gnl|Hg17|chr7 (121317076-121317483)
               

               
               1-382, gnl|oryCun1|scaffold_206421 (45879-45354)
               

               
               1-382, gnl|panTro1|chr6 (123653413-123653870)
               

               
               1-382, gnl|rheMac2|chr3 (159610026-159610484)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr4 (47790224-47789847)
               

               
               1-382, gnl|dasNov1|scaffold_79272 (4595-4139)
               

               
               1-382, gnl|hg17|chr7 (121317017-121317473)
               

               
               1-382, gnl|Hg17|chr7 (121317076-121317483)
               

               
               1-382, gnl|oryCun1|scaffold_206421 (45879-45354)
               

               
               1-382, gnl|panTro1|chr6 (123653413-123653870)
               

               
               1-382, gnl|rheMac2|chr3 (159610026-159610484)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	209-318, - strand, RNAz p=0.906102
	220-338, - strand, RNAz p=0.60858

	1-382, gnl\|bosTau2\|chr4 (47790224-47789847)
	1-382, gnl\|dasNov1\|scaffold_79272 (4595-4139)
	1-382, gnl\|hg17\|chr7 (121317017-121317473)
	1-382, gnl\|Hg17\|chr7 (121317076-121317483)
	1-382, gnl\|oryCun1\|scaffold_206421 (45879-45354)
	1-382, gnl\|panTro1\|chr6 (123653413-123653870)
	1-382, gnl\|rheMac2\|chr3 (159610026-159610484)