Non-Coding RNA Search

rcmu24_k11.y1

Sequence:


               
               TGATATAAGCACCCATTCACTCATTCTTCATGATTTGATACCACCTCCTGTGTGCAGATT
CATGAAGATCACTGTCATTGGACGTTATGGAAGTACAAATGCCAGAGCTAAAATTCCATT
AGGATTTTACTATGGTCATACCTATATCTTGCCTTGGGAGAGTGAATTGAAATTAATGCA
TGATCCTCTGAGGGGCGAGGGAGAATCTGCAAACCAACCTGAAATTGACCAGCATTTAGC
AATGATGGTTGCTCTACAGGAGGATATACAGTGCAGGTATAACTTAGCTTGTCATCGACT
GGAAACTTTATTGCAAAGTATTGATCTCCCTCCTCTCAACAGTGCTAACAATGCACAGTA
CTTTTTGAGAAAGCCAGACAAGGCAGTCGAGGAGGACAGTAGAGTTTTTTCTGCCTATCA
AGACTGCATTCAGCTACAGCTTCAACTAAATTTGGCTCATAACGCTGTACAGAGGCTCAG
AGTAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATATAAGCACCCATTCACTCATTCTTCATGATTTGATACCACCTCCTGTGTGCAGATT
CATGAAGATCACTGTCATTGGACGTTATGGAAGTACAAATGCCAGAGCTAAAATTCCATT
AGGATTTTACTATGGTCATACCTATATCTTGCCTTGGGAGAGTGAATTGAAATTAATGCA
TGATCCTCTGAGGGGCGAGGGAGAATCTGCAAACCAACCTGAAATTGACCAGCATTTAGC
AATGATGGTTGCTCTACAGGAGGATATACAGTGCAGGTATAACTTAGCTTGTCATCGACT
GGAAACTTTATTGCAAAGTATTGATCTCCCTCCTCTCAACAGTGCTAACAATGCACAGTA
CTTTTTGAGAAAGCCAGACAAGGCAGTCGAGGAGGACAGTAGAGTTTTTTCTGCCTATCA
AGACTGCATTCAGCTACAGCTTCAACTAAATTTGGCTCATAACGCTGTACAGAGGCTCAG
AGTAGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               145-278, + strand, RNAz p=0.96736
               

               
               158-278, - strand, RNAz p=0.993444

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-278, + strand, RNAz p=0.96736
               

               
               158-278, - strand, RNAz p=0.993444

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               106-190, - strand, RNAmicro p=0.930326

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               106-190, - strand, RNAmicro p=0.930326

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               176-276, BB586321 RIKEN full-length enriched, adult male urinary bladder Mus 
(dbj|BB586321.2|), blast E-value=1e-22, identity=89.11% 
               

               
               176-276, vk69c12.s1 Knowles Solter mouse 2 cell Mus musculus cDNA clone 
(gb|AA547134.1|), blast E-value=1e-22, identity=89.11% 
               

               
               195-276, UI-M-CG0p-bex-f-05-0-UI.r1 NIH_BMAP_Ret4_S2 Mus musculus cDNA clone 
(gb|BM938606.1|), blast E-value=9e-21, identity=91.46% 
               

               
               161-278, AGENCOURT_7762395 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ439622.1|), blast E-value=2e-37, identity=92.37% 
               

               
               176-276, LL6in12300T7 AFT024-subtracted library Mus musculus cDNA 5' similar 
(gb|BQ831484.1|), blast E-value=1e-22, identity=89.11% 
               

               
               161-278, AMGNNUC (gb|CB547433.1|), blast E-value=6e-28, identity=88.98%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               176-276, BB586321 RIKEN full-length enriched, adult male urinary bladder Mus 
(dbj|BB586321.2|), blast E-value=1e-22, identity=89.11% 
               

               
               176-276, vk69c12.s1 Knowles Solter mouse 2 cell Mus musculus cDNA clone 
(gb|AA547134.1|), blast E-value=1e-22, identity=89.11% 
               

               
               195-276, UI-M-CG0p-bex-f-05-0-UI.r1 NIH_BMAP_Ret4_S2 Mus musculus cDNA clone 
(gb|BM938606.1|), blast E-value=9e-21, identity=91.46% 
               

               
               161-278, AGENCOURT_7762395 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ439622.1|), blast E-value=2e-37, identity=92.37% 
               

               
               176-276, LL6in12300T7 AFT024-subtracted library Mus musculus cDNA 5' similar 
(gb|BQ831484.1|), blast E-value=1e-22, identity=89.11% 
               

               
               161-278, AMGNNUC (gb|CB547433.1|), blast E-value=6e-28, identity=88.98%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF265555, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF265555, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               66-278, gnl|bosTau2|chr11 (12768671-12768883)
               

               
               66-278, gnl|canFam2|chr17 (28811454-28811634)
               

               
               66-278, gnl|danRer3|chr17 (19575443-19575279)
               

               
               66-278, gnl|dasNov1|scaffold_6651 (45146-44982)
               

               
               66-278, gnl|fr1|chrUn (237123999-237123839)
               

               
               66-278, gnl|galGal2|chr3 (27917113-27916949)
               

               
               66-278, gnl|hg17|chr2 (32604613-32604777)
               

               
               66-278, gnl|Hg17|chr2 (32604620-32604832)
               

               
               66-278, gnl|loxAfr1|scaffold_4313 (4491-4326)
               

               
               66-278, gnl|mm7|chr17 (72901884-72902048)
               

               
               66-278, gnl|Mm7|chr17 (72901891-72902103)
               

               
               66-278, gnl|monDom2|scaffold_1 (141621530-141621366)
               

               
               66-278, gnl|oryCun1|scaffold_208870 (86177-86013)
               

               
               66-278, gnl|panTro1|chr12 (33628975-33629139)
               

               
               66-278, gnl|rn3|chr6 (20749009-20748845)
               

               
               66-278, gnl|tetNig1|chrUn_random (50144435-50144275)
               

               
               66-278, gnl|xenTro1|scaffold_243 (920611-920775)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-278, gnl|bosTau2|chr11 (12768671-12768883)
               

               
               66-278, gnl|canFam2|chr17 (28811454-28811634)
               

               
               66-278, gnl|danRer3|chr17 (19575443-19575279)
               

               
               66-278, gnl|dasNov1|scaffold_6651 (45146-44982)
               

               
               66-278, gnl|fr1|chrUn (237123999-237123839)
               

               
               66-278, gnl|galGal2|chr3 (27917113-27916949)
               

               
               66-278, gnl|hg17|chr2 (32604613-32604777)
               

               
               66-278, gnl|Hg17|chr2 (32604620-32604832)
               

               
               66-278, gnl|loxAfr1|scaffold_4313 (4491-4326)
               

               
               66-278, gnl|mm7|chr17 (72901884-72902048)
               

               
               66-278, gnl|Mm7|chr17 (72901891-72902103)
               

               
               66-278, gnl|monDom2|scaffold_1 (141621530-141621366)
               

               
               66-278, gnl|oryCun1|scaffold_208870 (86177-86013)
               

               
               66-278, gnl|panTro1|chr12 (33628975-33629139)
               

               
               66-278, gnl|rn3|chr6 (20749009-20748845)
               

               
               66-278, gnl|tetNig1|chrUn_random (50144435-50144275)
               

               
               66-278, gnl|xenTro1|scaffold_243 (920611-920775)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	145-278, + strand, RNAz p=0.96736
	158-278, - strand, RNAz p=0.993444

	176-276, BB586321 RIKEN full-length enriched, adult male urinary bladder Mus (dbj\|BB586321.2\|), blast E-value=1e-22, identity=89.11%
	176-276, vk69c12.s1 Knowles Solter mouse 2 cell Mus musculus cDNA clone (gb\|AA547134.1\|), blast E-value=1e-22, identity=89.11%
	195-276, UI-M-CG0p-bex-f-05-0-UI.r1 NIH_BMAP_Ret4_S2 Mus musculus cDNA clone (gb\|BM938606.1\|), blast E-value=9e-21, identity=91.46%
	161-278, AGENCOURT_7762395 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BQ439622.1\|), blast E-value=2e-37, identity=92.37%
	176-276, LL6in12300T7 AFT024-subtracted library Mus musculus cDNA 5' similar (gb\|BQ831484.1\|), blast E-value=1e-22, identity=89.11%
	161-278, AMGNNUC (gb\|CB547433.1\|), blast E-value=6e-28, identity=88.98%

	66-278, gnl\|bosTau2\|chr11 (12768671-12768883)
	66-278, gnl\|canFam2\|chr17 (28811454-28811634)
	66-278, gnl\|danRer3\|chr17 (19575443-19575279)
	66-278, gnl\|dasNov1\|scaffold_6651 (45146-44982)
	66-278, gnl\|fr1\|chrUn (237123999-237123839)
	66-278, gnl\|galGal2\|chr3 (27917113-27916949)
	66-278, gnl\|hg17\|chr2 (32604613-32604777)
	66-278, gnl\|Hg17\|chr2 (32604620-32604832)
	66-278, gnl\|loxAfr1\|scaffold_4313 (4491-4326)
	66-278, gnl\|mm7\|chr17 (72901884-72902048)
	66-278, gnl\|Mm7\|chr17 (72901891-72902103)
	66-278, gnl\|monDom2\|scaffold_1 (141621530-141621366)
	66-278, gnl\|oryCun1\|scaffold_208870 (86177-86013)
	66-278, gnl\|panTro1\|chr12 (33628975-33629139)
	66-278, gnl\|rn3\|chr6 (20749009-20748845)
	66-278, gnl\|tetNig1\|chrUn_random (50144435-50144275)
	66-278, gnl\|xenTro1\|scaffold_243 (920611-920775)