Non-Coding RNA Search

rcmu25_n14.y1

Sequence:


               
               CAATGAATTTCCTGATGATACCCTGAATTTCATCAAAACACACCCACTCATGGATGAGGC
CGTGCCTTCCATCATCAACAGGCCATGGTTCCTAAGGACGATGGTCAGATACCGCCTGAC
CAAAATTGCGGTGGACACTGCTGCTGGGCCATATCAGAATCACACTGTGGTTTTCCTGGG
ATCAGAAAAGGGAATCATCTTGAAGTTCTTGGCCAGGATAGGAAACAGTGGTTTCCTAAA
TGACAGCCTCTTCCTGGAGGAGATGAGCGTTTACAATCCTGAAAAGTGCGTAGAATGTTT
GGTTCTTTCCTAGTAATTATTTGCTACCTTATTATGATATTTTCCATTTAAAGAAACCTT
GGCAAACTTAGATTTTGTAAATTCTTAGGTGACTTTTAATATTATTTGTAACACTCTTTT
CATACATTAAAAGCATCATTTTCCCCTTAAAAAAAAAAAAAAAAAAAAAAAACTCGAGCC
TCGTGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGAATTTCCTGATGATACCCTGAATTTCATCAAAACACACCCACTCATGGATGAGGC
CGTGCCTTCCATCATCAACAGGCCATGGTTCCTAAGGACGATGGTCAGATACCGCCTGAC
CAAAATTGCGGTGGACACTGCTGCTGGGCCATATCAGAATCACACTGTGGTTTTCCTGGG
ATCAGAAAAGGGAATCATCTTGAAGTTCTTGGCCAGGATAGGAAACAGTGGTTTCCTAAA
TGACAGCCTCTTCCTGGAGGAGATGAGCGTTTACAATCCTGAAAAGTGCGTAGAATGTTT
GGTTCTTTCCTAGTAATTATTTGCTACCTTATTATGATATTTTCCATTTAAAGAAACCTT
GGCAAACTTAGATTTTGTAAATTCTTAGGTGACTTTTAATATTATTTGTAACACTCTTTT
CATACATTAAAAGCATCATTTTCCCCTTAAAAAAAAAAAAAAAAAAAAAAAACTCGAGCC
TCGTGCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-266, + strand, RNAz p=0.757447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-266, + strand, RNAz p=0.757447

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-448, gnl|bosTau2|chr7 (25578139-25577801)
               

               
               107-448, gnl|Hg17|chr5 (115842315-115841975)
               

               
               107-448, gnl|Mm7|chr18 (47659461-47659105)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-448, gnl|bosTau2|chr7 (25578139-25577801)
               

               
               107-448, gnl|Hg17|chr5 (115842315-115841975)
               

               
               107-448, gnl|Mm7|chr18 (47659461-47659105)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	107-448, gnl\|bosTau2\|chr7 (25578139-25577801)
	107-448, gnl\|Hg17\|chr5 (115842315-115841975)
	107-448, gnl\|Mm7\|chr18 (47659461-47659105)