Non-Coding RNA Search

rcmu26_m22.y1

Sequence:


               
               GGGATTTTCAAGCCACAATGAAGTGCTTTTTATGAATGGGACAGTCTTGACAAATAGGTA
TTTTGTATTAAGATGCTAAAATGTGGCAAATTATTTTCAAATGATAACTGAAAATGGGCA
TTTTTGTTATTTCACATCTTTTAAAGAACAGCTGACTTTACATTTCTTTTTCATTTTGAA
TTAGGAAAATTGTTAAGAATGGGGTGCGTTACCATGTGTAGAGTGGAAAGGAGCTGAGAG
GAGTGTCTCATTCCCACGGACACTTTCTGTGCCCTCACACACAGGGCTTAGACGTCTTCT
CCACATTCCACACAGACGCCTATAAGCGGCCAATTGCTGTCTGAAAATTCTTCCTCCTTG
TTCCCTAACACTTCTCCCCTCCCTCTCCCCCCCCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATTTTCAAGCCACAATGAAGTGCTTTTTATGAATGGGACAGTCTTGACAAATAGGTA
TTTTGTATTAAGATGCTAAAATGTGGCAAATTATTTTCAAATGATAACTGAAAATGGGCA
TTTTTGTTATTTCACATCTTTTAAAGAACAGCTGACTTTACATTTCTTTTTCATTTTGAA
TTAGGAAAATTGTTAAGAATGGGGTGCGTTACCATGTGTAGAGTGGAAAGGAGCTGAGAG
GAGTGTCTCATTCCCACGGACACTTTCTGTGCCCTCACACACAGGGCTTAGACGTCTTCT
CCACATTCCACACAGACGCCTATAAGCGGCCAATTGCTGTCTGAAAATTCTTCCTCCTTG
TTCCCTAACACTTCTCCCCTCCCTCTCCCCCCCCCAAAAAAAAAAAAAAAAAA

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-388, gnl|bosTau2|chr18 (13883003-13882606)
               

               
               1-388, gnl|canFam2|chr5 (83358357-83358019)
               

               
               1-388, gnl|dasNov1|scaffold_44618 (11147-11469)
               

               
               1-388, gnl|echTel1|scaffold_319253 (50103-50437)
               

               
               1-388, gnl|hg17|chr16 (67895116-67895448)
               

               
               1-388, gnl|Hg17|chr16 (67895116-67895514)
               

               
               1-388, gnl|loxAfr1|scaffold_101071 (338-6)
               

               
               1-388, gnl|mm7|chr8 (105613465-105613766)
               

               
               1-388, gnl|Mm7|chr8 (105613465-105613797)
               

               
               1-388, gnl|monDom2|scaffold_23 (4970521-4970186)
               

               
               1-388, gnl|oryCun1|scaffold_141494 (13473-13804)
               

               
               1-388, gnl|panTro1|chr18 (62235822-62236154)
               

               
               1-388, gnl|rheMac2|chr20 (67681150-67681481)
               

               
               1-388, gnl|rn3|chr19 (36873309-36873608)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-388, gnl|bosTau2|chr18 (13883003-13882606)
               

               
               1-388, gnl|canFam2|chr5 (83358357-83358019)
               

               
               1-388, gnl|dasNov1|scaffold_44618 (11147-11469)
               

               
               1-388, gnl|echTel1|scaffold_319253 (50103-50437)
               

               
               1-388, gnl|hg17|chr16 (67895116-67895448)
               

               
               1-388, gnl|Hg17|chr16 (67895116-67895514)
               

               
               1-388, gnl|loxAfr1|scaffold_101071 (338-6)
               

               
               1-388, gnl|mm7|chr8 (105613465-105613766)
               

               
               1-388, gnl|Mm7|chr8 (105613465-105613797)
               

               
               1-388, gnl|monDom2|scaffold_23 (4970521-4970186)
               

               
               1-388, gnl|oryCun1|scaffold_141494 (13473-13804)
               

               
               1-388, gnl|panTro1|chr18 (62235822-62236154)
               

               
               1-388, gnl|rheMac2|chr20 (67681150-67681481)
               

               
               1-388, gnl|rn3|chr19 (36873309-36873608)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cmu (0.186393)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.186393)

	1-388, gnl\|bosTau2\|chr18 (13883003-13882606)
	1-388, gnl\|canFam2\|chr5 (83358357-83358019)
	1-388, gnl\|dasNov1\|scaffold_44618 (11147-11469)
	1-388, gnl\|echTel1\|scaffold_319253 (50103-50437)
	1-388, gnl\|hg17\|chr16 (67895116-67895448)
	1-388, gnl\|Hg17\|chr16 (67895116-67895514)
	1-388, gnl\|loxAfr1\|scaffold_101071 (338-6)
	1-388, gnl\|mm7\|chr8 (105613465-105613766)
	1-388, gnl\|Mm7\|chr8 (105613465-105613797)
	1-388, gnl\|monDom2\|scaffold_23 (4970521-4970186)
	1-388, gnl\|oryCun1\|scaffold_141494 (13473-13804)
	1-388, gnl\|panTro1\|chr18 (62235822-62236154)
	1-388, gnl\|rheMac2\|chr20 (67681150-67681481)
	1-388, gnl\|rn3\|chr19 (36873309-36873608)